Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 0.0e+00 2899.4 1465 100.0
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 0.0e+00 2607.0 1455 92.6
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 0.0e+00 1836.2 1436 70.4
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 8.5e-269 931.4 1434 45.4
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.7e-256 890.6 1560 42.8
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.3e-253 880.9 1555 42.1
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.5e-238 829.7 1282 45.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.5e-212 743.8 1445 40.1
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.7e-197 694.5 1553 37.0
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.6e-188 662.9 1554 35.6
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-185 655.2 1520 37.4
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 6.0e-182 642.9 1383 37.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.6e-166 591.7 1605 34.4
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.5e-159 567.8 1402 36.1
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.8e-133 481.9 1101 35.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 8.5e-128 463.0 1504 32.1
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.9e-127 461.8 1353 33.9
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.2e-123 448.4 1512 32.1
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 3.7e-123 447.6 1424 32.8
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 7.0e-122 443.4 1346 33.4
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 2.2e-115 421.8 1406 31.7
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 4.1e-114 417.5 1399 32.2
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.9e-111 408.7 1335 31.5
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.2e-107 395.2 1350 31.2
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 1.1e-106 392.9 1525 30.4
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 3.2e-106 391.3 1338 31.7
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 7.8e-105 386.7 1324 32.2
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.7e-104 385.6 1321 31.1
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.6e-92 345.1 1447 29.0
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.6e-89 335.9 1492 28.6
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 1.3e-88 332.8 1475 29.1
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 2.0e-76 292.4 1441 28.2
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 1.3e-72 279.6 1444 28.1
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.1e-69 268.5 420 45.0
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 4.0e-69 268.1 1406 28.7
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 9.3e-66 256.9 1418 29.1
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 7.9e-65 253.8 1414 28.9
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.0e-64 251.9 1418 29.0
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.6e-63 247.7 1429 29.4
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.4e-60 238.4 1424 29.1
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.5e-60 238.0 1421 28.9
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.4e-58 233.0 1422 28.7
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 2.5e-58 232.3 1391 27.5
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 3.2e-58 231.9 1408 28.6
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 9.3e-58 230.3 1431 26.0
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 6.0e-57 227.6 1380 28.6
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 6.0e-57 227.6 1404 27.3
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.9e-56 224.9 1372 26.4
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.5e-55 222.2 1380 27.1
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.3e-55 221.5 1227 28.6
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.3e-55 221.5 1227 28.6
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.2e-52 213.4 1421 27.7
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.0e-51 210.3 1353 28.5
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 3.8e-51 208.4 1358 27.4
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 7.2e-50 204.1 419 38.2
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.3e-48 199.9 1407 26.7
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 8.7e-48 197.2 1439 26.0
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 3.3e-47 195.3 1378 27.6
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 4.3e-47 194.9 1461 26.5
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 3.1e-45 188.7 1443 26.0
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 5.3e-45 188.0 616 31.0
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.9e-43 182.2 201 54.7
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 6.5e-43 181.0 1476 26.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 6.5e-43 181.0 1587 25.5
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 3.2e-42 178.7 1338 25.9
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 5.7e-39 167.9 1395 25.5
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 1.7e-35 156.4 1437 25.3
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.9e-34 152.9 1415 24.2
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.5e-34 151.4 1288 26.0
HanXRQChr17g0533291 Helianthus annuus HOM05D006627 ORTHO05D007753 1.2e-33 150.2 1302 25.0
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 6.7e-32 144.4 1442 25.2
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 6.7e-32 144.4 1442 25.2
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 8.8e-32 144.1 356 34.8
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 4.4e-31 141.7 1422 25.1
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 9.7e-31 140.6 1468 24.5
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.4e-29 136.7 1615 25.0
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.4e-29 136.7 1401 24.3
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 1.8e-29 136.3 1363 24.5
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 4.1e-29 135.2 1377 25.3
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 5.3e-29 134.8 1463 24.2
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 9.1e-29 134.0 448 31.2
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.2e-28 133.7 1479 24.9
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 5.9e-28 131.3 1363 24.4
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.3e-27 130.2 1283 25.2
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 1.3e-27 130.2 1507 23.8
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 2.2e-27 129.4 1372 25.4
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 5.5e-26 124.8 1598 25.1
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 7.2e-26 124.4 1253 25.0
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 8.8e-24 117.5 481 29.9
Lsat_1_v5_gn_3_6981 Lactuca sativa HOM05D006627 ORTHO05D007753 3.3e-23 115.5 1333 24.5
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.8e-22 112.5 1501 23.8
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 2.8e-22 112.5 1369 23.4
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 4.8e-22 111.7 1380 23.7
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 4.8e-22 111.7 1461 25.1
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 1.8e-21 109.8 1403 23.2
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 9.1e-21 107.5 1277 23.1
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.2e-20 107.1 842 26.8
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.6e-20 106.7 371 31.8
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.3e-19 103.6 363 30.3
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 3.8e-19 102.1 530 27.2
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-18 100.5 360 31.4
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 3.2e-18 99.0 353 29.5
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 3.2e-18 99.0 353 29.5
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 4.2e-18 98.6 346 28.6
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 5.5e-18 98.2 351 30.8
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 5.5e-18 98.2 330 29.4
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 7.2e-18 97.8 357 28.3
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 9.4e-18 97.4 332 29.5
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 9.4e-18 97.4 677 26.7
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 4.7e-17 95.1 219 36.5
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 8.0e-17 94.4 1273 23.3
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.4e-16 93.6 1352 23.2
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 3.0e-16 92.4 390 30.0
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 5.2e-16 91.7 1470 22.6
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 1.2e-15 90.5 1380 23.6
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 5.7e-15 88.2 651 23.8
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.1e-13 84.0 379 29.0
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.8e-13 83.2 376 29.0
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.0e-12 79.7 425 27.5
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 3.5e-12 79.0 343 30.0
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 4.5e-12 78.6 385 26.5
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 1.0e-11 77.4 388 27.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.9e-11 75.9 739 24.8
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 2.5e-10 72.8 557 25.7
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 7.2e-10 71.2 333 27.9
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 2.1e-09 69.7 1247 21.5
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 4.7e-09 68.6 1438 23.0
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.4e-08 67.0 234 32.9
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 4.0e-08 65.5 351 25.6
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 6.8e-08 64.7 389 27.2
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.2e-07 63.9 404 28.5
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 1.5e-07 63.5 277 27.8
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.7e-06 60.1 315 27.9
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.7e-06 58.9 238 30.3
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.7e-06 58.9 905 24.0
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 4.9e-06 58.5 1252 21.2
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 8.3e-06 57.8 459 24.0


User provided reference genes

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