Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 2.2e-47 192.2 114 100.0
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.6e-16 89.0 94 56.4
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.9e-16 87.0 92 57.6
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 6.9e-09 64.3 103 38.8
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 4.5e-08 61.6 35 71.4
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 5.8e-08 61.2 52 53.8
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.8e-08 61.2 52 53.8
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.8e-08 61.2 41 61.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 7.6e-08 60.8 36 69.4
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.9e-08 60.5 49 55.1
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.3e-07 60.1 45 57.8
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.7e-07 59.7 72 45.8
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 2.2e-07 59.3 52 55.8
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.9e-07 58.9 45 57.8
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.8e-07 58.5 45 55.6
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 3.8e-07 58.5 76 44.7
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.8e-07 58.5 52 50.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.8e-07 58.5 52 51.9
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.8e-07 58.5 52 51.9
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 3.8e-07 58.5 74 43.2
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 3.8e-07 58.5 74 43.2
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.9e-07 58.2 76 43.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 6.4e-07 57.8 41 58.5
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.4e-07 57.8 84 41.7
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.4e-07 57.8 84 41.7
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 6.4e-07 57.8 70 48.6
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.4e-07 57.8 36 63.9
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.4e-07 57.8 36 63.9
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.4e-07 57.8 36 63.9
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 8.4e-07 57.4 39 61.5
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 8.4e-07 57.4 52 51.9
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.4e-07 57.4 58 50.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.1e-06 57.0 92 39.1
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.1e-06 57.0 34 64.7
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 1.1e-06 57.0 56 48.2
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.4e-06 56.6 63 42.9
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.4e-06 56.6 55 50.9
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.9e-06 56.2 94 37.2
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.9e-06 56.2 32 71.9
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.4e-06 55.8 60 46.7
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.4e-06 55.8 78 37.2
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 2.4e-06 55.8 68 42.6
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.4e-06 55.8 54 50.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.2e-06 55.1 59 52.5
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 5.5e-06 54.7 59 47.5
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 7.1e-06 54.3 60 46.7
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 7.1e-06 54.3 84 36.9
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.1e-06 54.3 99 38.4
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 7.1e-06 54.3 29 72.4
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 7.1e-06 54.3 33 66.7
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 7.1e-06 54.3 33 66.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 7.1e-06 54.3 94 38.3
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 9.3e-06 53.9 79 34.2


User provided reference genes

Program Settings