Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.2e-253 877.9 426 100.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.4e-200 702.2 420 83.1
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 5.6e-181 637.9 423 75.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.0e-174 617.1 420 71.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 8.7e-174 614.0 411 73.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.3e-173 611.7 420 72.4
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.2e-172 607.8 422 70.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.3e-171 604.7 420 71.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.3e-171 604.7 420 71.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.0e-170 602.8 420 69.8
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.8e-170 601.3 423 70.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 8.4e-169 597.4 428 68.2
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.9e-168 596.3 416 71.4
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.7e-167 592.4 420 68.8
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.6e-167 591.7 338 82.0
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.6e-167 591.7 420 68.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.0e-166 590.5 421 70.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-166 590.1 440 67.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.3e-166 589.3 420 68.1
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.0e-166 589.0 420 68.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.9e-166 588.6 338 80.5
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 3.3e-165 585.5 420 67.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.3e-165 585.1 420 67.6
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 5.7e-165 584.7 420 68.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 9.7e-165 583.9 353 78.8
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.6e-164 583.2 420 69.5
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.7e-164 582.0 420 67.1
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 6.3e-164 581.3 413 69.0
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 8.2e-164 580.9 423 69.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.1e-163 580.5 410 69.8
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.4e-163 579.3 341 79.8
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.1e-163 578.9 338 79.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.9e-161 572.4 421 69.1
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.8e-161 572.0 341 78.3
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.0e-158 563.9 422 66.1
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.3e-157 558.9 420 65.2
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 7.4e-157 557.8 421 64.4
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 9.7e-157 557.4 413 66.6
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.7e-157 557.4 421 64.4
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 4.8e-156 555.1 424 64.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.1e-155 553.9 420 66.2
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.1e-155 550.8 422 66.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.5e-154 550.1 421 63.7
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.4e-154 548.9 338 77.5
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 4.5e-154 548.5 411 66.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.1e-152 543.9 363 71.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.1e-152 543.9 420 64.3
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.9e-152 543.1 397 67.0
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.4e-152 540.8 420 64.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 9.4e-152 540.8 420 62.6
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.2e-151 540.4 421 64.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.2e-151 540.4 420 64.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.9e-151 537.7 421 62.7
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.4e-150 537.0 408 65.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.3e-150 536.2 421 62.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-150 535.4 421 62.5
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 5.1e-150 535.0 331 74.6
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.7e-150 534.6 390 67.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-149 532.7 413 64.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.6e-149 532.7 420 63.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.6e-149 532.7 441 61.7
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.7e-149 531.6 390 67.2
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.7e-148 530.0 390 66.4
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-147 526.6 338 75.4
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 5.3e-147 525.0 308 78.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.0e-147 524.6 442 61.1
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-146 523.5 441 60.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-146 523.5 421 63.2
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-145 520.8 442 60.6
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.8e-145 518.8 390 64.9
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 5.0e-145 518.5 436 59.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.0e-145 518.5 416 63.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 5.0e-145 518.5 391 65.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 6.5e-145 518.1 308 77.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.2e-144 515.4 420 60.7
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-143 512.7 339 71.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.7e-143 511.9 392 63.8
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.9e-142 508.8 420 61.2
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.1e-141 507.3 338 71.3
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.3e-141 505.8 327 69.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 9.7e-141 504.2 395 65.3
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 6.3e-140 501.5 339 69.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.4e-139 500.4 420 58.1
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.0e-139 498.0 421 59.1
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 9.1e-139 497.7 436 58.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.6e-138 496.1 339 71.1
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.6e-138 496.1 338 68.9
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.2e-137 493.0 371 65.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.8e-137 492.3 338 67.8
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.2e-136 489.2 345 66.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.4e-136 487.6 371 65.5
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.6e-135 486.9 430 58.6
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-135 485.3 339 67.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.8e-134 483.4 340 69.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.0e-134 482.3 341 66.9
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.0e-134 482.3 341 66.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 6.7e-134 481.5 341 67.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.0e-133 479.9 340 68.8
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.3e-133 479.2 453 58.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 7.5e-133 478.0 341 66.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.3e-132 477.2 340 67.4
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 8.2e-132 474.6 348 65.8
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 9.1e-131 471.1 340 66.5
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.0e-129 465.3 419 56.6
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.1e-128 464.2 343 67.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-127 459.1 370 60.8
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 6.8e-126 454.9 413 55.9
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.7e-124 449.1 338 68.0
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.0e-123 444.9 310 65.5
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.7e-121 440.3 432 57.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.3e-120 436.0 273 76.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.4e-118 430.6 243 83.1
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.3e-116 424.1 366 59.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 6.3e-116 421.8 281 70.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.6e-111 406.0 335 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.1e-107 394.4 331 57.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.9e-107 393.7 308 56.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.6e-106 389.0 308 56.2
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 9.5e-96 354.8 212 75.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-91 340.1 179 83.8
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.1e-91 338.6 276 59.8
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.2e-90 337.8 276 59.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 6.0e-90 335.5 345 53.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 4.4e-85 319.3 313 52.1
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.6e-82 309.3 426 47.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.6e-79 299.7 316 45.6
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 3.0e-73 280.0 253 57.7
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.5e-69 267.7 253 54.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 7.1e-67 258.8 163 76.7
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.1e-64 251.5 332 40.7
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.3e-64 250.0 309 42.1
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-63 247.3 381 42.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.8e-57 227.6 119 85.7
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.8e-54 217.6 194 55.2
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.3e-54 216.1 223 52.5
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.9e-52 210.3 186 56.5
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.7e-40 168.7 146 58.9
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-38 164.1 197 46.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.3e-36 158.3 85 82.4
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 3.6e-34 150.2 173 51.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-33 148.7 99 72.7
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-33 147.5 222 39.2
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 3.5e-21 107.1 130 43.8
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-18 98.2 70 70.0
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.8e-15 86.7 186 37.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.5e-13 80.1 153 34.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.9e-13 79.7 153 34.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.2e-09 66.6 36 80.6
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.3e-07 59.7 53 62.3
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 9.1e-06 55.8 58 51.7


User provided reference genes

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