Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 0.0e+00 1092.4 714 100.0
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 3.0e-195 686.0 513 93.0
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 4.0e-147 526.2 524 75.6
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 7.8e-135 485.3 526 65.2
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 4.3e-133 479.6 561 66.7
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.1e-126 456.1 561 60.4
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.8e-124 450.3 565 54.7
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.4e-123 448.0 550 52.2
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 6.4e-121 439.1 534 54.3
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 8.4e-121 438.7 534 60.5
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.1e-120 438.3 523 56.0
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 3.2e-120 436.8 544 52.0
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 3.5e-119 433.3 553 54.8
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 3.0e-118 430.3 534 58.6
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.9e-117 427.6 554 45.1
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 1.9e-117 427.6 534 62.0
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 2.5e-117 427.2 555 53.7
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.8e-115 421.0 530 61.9
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 3.1e-115 420.2 534 56.6
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 5.3e-115 419.5 526 59.3
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.2e-114 418.3 532 57.7
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 3.4e-114 416.8 527 59.4
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 9.3e-112 408.7 529 62.4
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 1.6e-108 397.9 531 62.5
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 3.1e-107 393.7 524 58.6
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 5.0e-105 386.3 373 65.1
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 6.1e-103 379.4 532 54.3
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.8e-102 377.9 541 55.1
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 5.1e-102 376.3 520 58.1
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 6.7e-102 375.9 539 52.5
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 6.7e-102 375.9 529 54.3
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 1.1e-101 375.2 518 58.3
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 6.3e-100 369.4 518 57.5
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.1e-99 368.6 530 54.5
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 1.4e-99 368.2 520 57.9
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 1.2e-98 365.2 518 59.1
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 1.3e-97 361.7 545 56.1
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 6.5e-97 359.4 489 58.9
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.7e-95 354.0 516 56.0
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 4.6e-95 353.2 514 48.8
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 7.9e-95 352.4 519 52.8
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 3.0e-94 350.5 522 52.5
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 8.8e-94 349.0 534 58.4
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 8.8e-94 349.0 534 59.6
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 5.7e-93 346.3 528 52.5
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 9.7e-93 345.5 584 48.1
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 9.7e-93 345.5 499 58.3
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.7e-92 344.7 528 45.8
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 4.8e-92 343.2 532 54.5
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 3.1e-91 340.5 520 54.0
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 7.7e-90 335.9 528 51.9
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 5.0e-89 333.2 532 54.9
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 1.1e-88 332.0 525 51.0
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 7.2e-88 329.3 519 57.0
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 1.2e-87 328.6 525 57.9
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 1.2e-87 328.6 533 57.8
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 4.4e-85 320.1 524 56.5
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 9.7e-85 318.9 555 54.2
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.3e-84 318.5 551 56.1
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 1.6e-82 311.6 523 56.2
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 1.3e-81 308.5 523 45.3
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 8.0e-79 299.3 528 50.0
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.8e-78 298.1 518 51.0
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.3e-78 297.7 531 49.9
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 3.0e-78 297.4 487 54.8
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 3.3e-77 293.9 530 50.9
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 2.2e-76 291.2 523 54.7
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 3.7e-76 290.4 529 49.1
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 4.8e-76 290.0 300 64.7
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 4.7e-71 273.5 527 52.2
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 6.1e-71 273.1 542 44.6
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 8.0e-71 272.7 515 50.5
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 3.0e-70 270.8 495 47.1
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.0e-69 268.1 552 51.1
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 7.5e-69 266.2 534 45.3
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 7.5e-69 266.2 534 45.3
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 1.4e-67 261.9 494 45.5
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 4.1e-67 260.4 529 46.1
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 5.4e-67 260.0 539 45.8
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 5.4e-67 260.0 539 45.8
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 7.0e-67 259.6 457 53.0
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 9.1e-67 259.2 551 44.1
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 6.5e-65 253.1 539 45.5
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 8.5e-65 252.7 367 52.9
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 1.5e-64 251.9 534 52.8
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.5e-64 251.1 329 55.0
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 3.0e-62 244.2 533 40.9
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 3.0e-62 244.2 533 40.9
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 2.8e-55 221.1 547 44.4
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 2.6e-53 214.5 523 40.5
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 7.5e-53 213.0 268 65.3
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 6.4e-52 209.9 540 46.7
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 1.2e-50 205.7 519 41.8
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 2.7e-50 204.5 543 46.4
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.3e-49 202.2 542 46.3
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.3e-49 201.4 324 40.4
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 6.6e-49 199.9 532 44.9
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 2.5e-48 198.0 457 29.8
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 2.8e-47 194.5 519 46.2
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.4e-46 192.2 546 43.4
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 4.1e-43 180.6 532 44.5
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 6.2e-39 166.8 518 37.1
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 4.4e-37 160.6 540 44.1
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 3.5e-34 151.0 227 51.5
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.8e-30 138.7 485 34.8
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.2e-28 131.7 151 51.7
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 6.0e-26 123.6 332 42.8
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 5.8e-21 107.1 214 52.8
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 7.1e-11 73.6 66 53.0
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 5.6e-08 63.9 177 31.1
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 8.1e-07 60.1 68 48.5
Medtr0050s0150 Medicago truncatula HOM05D006572 ORTHO05D008181 3.1e-06 58.2 117 41.9


User provided reference genes

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