Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.4e-23 110.9 60 100.0
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 2.6e-15 84.7 41 100.0
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 2.2e-14 81.6 41 92.7
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 3.7e-14 80.9 41 92.7
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 1.1e-13 79.3 41 92.7
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.9e-13 78.6 41 90.2
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.9e-13 78.6 41 90.2
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 2.4e-13 78.2 41 90.2
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.1e-13 77.4 41 87.8
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 4.1e-13 77.4 41 82.9
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 5.4e-13 77.0 41 87.8
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 7.1e-13 76.6 41 90.2
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 7.1e-13 76.6 41 87.8
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 9.2e-13 76.3 41 87.8
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.2e-12 75.9 41 82.9
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.2e-12 75.9 41 85.4
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.2e-12 75.9 41 85.4
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.2e-12 75.9 41 85.4
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.6e-12 75.5 41 87.8
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 2.1e-12 75.1 41 87.8
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.7e-12 74.7 41 85.4
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 3.5e-12 74.3 41 82.9
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 3.5e-12 74.3 41 80.5
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 4.6e-12 73.9 41 82.9
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 7.8e-12 73.2 41 80.5
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 1.3e-11 72.4 41 80.5
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 2.3e-11 71.6 41 78.0
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 3.0e-11 71.2 41 80.5
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 3.0e-11 71.2 41 80.5
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.0e-11 71.2 41 80.5
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 3.0e-11 71.2 41 75.6
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 3.9e-11 70.9 41 80.5
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 3.9e-11 70.9 41 80.5
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 5.1e-11 70.5 41 78.0
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 5.1e-11 70.5 41 78.0
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 5.1e-11 70.5 41 80.5
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 6.6e-11 70.1 41 80.5
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 6.6e-11 70.1 41 78.0
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 6.6e-11 70.1 41 78.0
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 8.6e-11 69.7 41 75.6
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 8.6e-11 69.7 41 75.6
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 8.6e-11 69.7 41 78.0
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 8.6e-11 69.7 42 73.8
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.5e-10 68.9 41 78.0
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.5e-10 68.9 41 75.6
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 1.5e-10 68.9 41 78.0
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 2.5e-10 68.2 41 78.0
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.5e-10 68.2 41 78.0
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 3.3e-10 67.8 41 75.6
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 3.3e-10 67.8 41 78.0
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.3e-10 67.4 41 75.6
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 7.3e-10 66.6 41 73.2
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 7.3e-10 66.6 41 75.6
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 7.3e-10 66.6 41 75.6
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.5e-10 66.2 41 75.6
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 9.5e-10 66.2 41 70.7
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.2e-09 65.9 40 75.0
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 1.2e-09 65.9 41 73.2
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 73.2
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 73.2
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 73.2
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 73.2
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 2.1e-09 65.1 41 75.6
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 4.7e-09 63.9 37 78.4
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.1e-08 62.8 41 70.7
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.1e-08 62.8 41 70.7
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.8e-08 62.0 39 71.8
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.3e-08 61.6 41 70.7
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.1e-08 61.2 41 70.7
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 5.2e-08 60.5 37 73.0
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.5e-07 58.9 41 73.2
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.0e-07 58.5 41 68.3
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.4e-07 57.8 65 47.7
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 3.7e-06 54.3 73 45.2
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 6.4e-06 53.5 51 56.9
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.4e-06 53.1 35 68.6


User provided reference genes

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