Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-105 386.3 214 100.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-93 345.5 219 83.1
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.5e-89 333.2 214 80.8
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.5e-89 333.2 214 80.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 5.5e-76 288.1 213 71.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-75 286.6 199 74.4
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 6.1e-75 284.6 214 70.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 5.1e-74 281.6 168 86.9
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 7.4e-73 277.7 173 82.7
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-71 273.5 210 70.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 7.7e-62 241.1 216 61.1
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.0e-61 240.7 220 60.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.5e-60 236.9 220 60.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.5e-60 236.9 217 59.4
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 7.2e-60 234.6 216 59.7
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.2e-60 234.6 219 58.9
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.0e-58 230.7 216 59.7
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.8e-58 228.0 215 57.2
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.8e-58 228.0 220 58.6
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.5e-57 226.9 217 57.6
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.4e-57 225.7 218 57.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 5.7e-57 224.9 219 57.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.7e-56 222.2 217 58.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 4.8e-56 221.9 218 58.3
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.3e-56 221.5 218 56.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.1e-55 220.7 218 57.8
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.4e-55 219.5 217 56.2
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.1e-55 218.8 217 57.6
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.1e-55 217.6 216 55.1
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.6e-54 216.9 216 55.1
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-54 216.5 217 56.7
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.0e-54 216.5 214 57.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.7e-54 216.1 216 57.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.5e-54 215.7 217 56.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.5e-54 215.7 216 56.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.5e-54 215.7 216 56.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.5e-54 215.3 218 54.1
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.0e-53 214.2 217 54.8
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 2.2e-53 213.0 217 56.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.2e-53 213.0 217 56.7
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.2e-53 213.0 217 56.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.2e-53 213.0 217 56.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.8e-53 212.2 218 54.6
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.5e-53 211.1 217 56.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.5e-52 210.3 216 54.6
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.9e-52 209.9 272 47.4
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.9e-52 209.9 217 54.4
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.5e-52 209.5 216 55.6
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.2e-52 209.1 219 53.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.2e-52 208.8 216 51.4
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.5e-52 208.4 221 57.9
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.2e-52 208.0 217 55.8
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 9.4e-52 207.6 213 54.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.6e-51 205.7 215 55.8
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.7e-51 205.3 220 52.7
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 8.0e-51 204.5 216 52.8
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.3e-50 203.0 216 57.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.2e-50 201.8 220 50.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 8.8e-50 201.1 216 48.6
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 8.8e-50 201.1 216 55.1
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.2e-49 200.7 216 56.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.2e-49 200.7 212 54.7
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-49 200.7 216 56.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.6e-49 199.5 219 52.1
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 4.4e-49 198.7 218 54.6
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 5.7e-49 198.4 216 55.1
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-47 194.1 216 54.6
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-47 194.1 216 54.6
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.4e-47 193.7 213 56.8
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.4e-47 193.7 216 54.6
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-47 193.4 219 52.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.8e-47 193.4 219 52.1
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.8e-47 193.4 220 52.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.1e-47 192.2 216 53.2
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 5.4e-47 191.8 263 45.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 9.2e-47 191.0 216 49.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 9.2e-47 191.0 216 49.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 9.2e-47 191.0 216 49.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.2e-47 191.0 219 49.8
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 9.2e-47 191.0 229 49.8
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-46 190.7 218 49.1
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.2e-46 190.7 225 52.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.6e-46 190.3 215 50.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.6e-46 190.3 215 50.2
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 2.7e-46 189.5 212 50.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 2.7e-46 189.5 212 50.5
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.5e-46 189.1 188 55.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.9e-46 188.3 218 51.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.9e-46 188.3 218 51.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 7.7e-46 188.0 219 49.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.7e-46 188.0 219 49.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.0e-45 187.6 215 49.3
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.0e-45 187.6 214 53.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.3e-45 186.4 218 47.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.8e-45 185.7 218 51.4
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.6e-45 184.9 219 48.4
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.6e-45 184.5 213 49.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.1e-44 184.1 215 48.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.9e-44 183.3 218 52.8
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.9e-44 183.3 328 38.4
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.3e-44 182.2 182 56.0
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.5e-44 181.0 217 51.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 9.5e-44 181.0 216 49.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.2e-43 180.6 215 47.4
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.2e-43 180.6 183 56.3
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.8e-43 179.5 190 53.2
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.8e-43 179.5 220 49.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.8e-43 179.5 216 48.6
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.8e-43 179.5 216 48.6
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 6.1e-43 178.3 222 49.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.1e-43 178.3 216 48.1
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-42 177.2 219 50.7
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.8e-42 176.8 215 47.4
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-42 176.4 230 46.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.3e-42 176.4 216 50.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.2e-42 175.3 215 47.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.5e-41 173.7 221 46.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 5.7e-41 171.8 212 48.1
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 9.8e-41 171.0 218 48.6
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 4.9e-40 168.7 216 46.3
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.4e-39 167.2 197 48.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.4e-39 166.4 188 52.7
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.0e-39 164.9 216 49.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 7.0e-39 164.9 222 46.4
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 2.7e-38 162.9 197 49.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 3.5e-38 162.5 189 47.1
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.3e-37 160.6 218 45.4
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.7e-37 160.2 212 44.8
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.3e-37 159.8 218 44.5
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 3.0e-37 159.5 93 82.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 3.9e-37 159.1 241 44.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 8.6e-37 157.9 216 46.3
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.1e-36 157.5 191 48.7
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 5.6e-36 155.2 216 44.9
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.8e-34 150.2 134 62.7
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.5e-33 147.1 213 41.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.5e-33 147.1 215 44.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.4e-33 146.0 217 46.1
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 7.0e-31 138.3 184 44.6
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.2e-30 137.5 184 45.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.6e-30 137.1 219 41.1
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 7.8e-30 134.8 126 57.9
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.9e-29 132.5 160 47.5
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.5e-28 129.8 185 43.2
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 9.5e-28 127.9 103 62.1
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.8e-27 126.3 161 52.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 3.6e-27 125.9 127 57.5
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-26 122.5 157 49.7
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 4.0e-26 122.5 155 45.2
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.3e-24 117.5 148 45.3
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.9e-24 116.3 154 44.2
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.9e-24 116.3 213 38.0
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.2e-23 112.8 107 54.2
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.0e-22 108.6 163 42.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 7.8e-22 108.2 109 49.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.5e-20 104.0 117 48.7
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.9e-20 103.6 160 45.0
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 8.1e-19 98.2 153 42.5
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.4e-16 88.6 125 48.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.3e-13 80.9 40 97.5
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.3e-13 80.1 88 51.1
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.9e-13 79.3 214 33.2
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.5e-12 77.4 93 45.2
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.6e-11 73.9 123 38.2
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.8e-11 73.2 40 82.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.8e-11 73.2 40 82.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.8e-11 73.2 39 87.2
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 6.2e-11 72.0 103 41.7
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 6.2e-11 72.0 103 41.7
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 8.9e-10 68.2 103 40.8
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 8.9e-10 68.2 103 40.8
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 7.6e-09 65.1 40 70.0
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 7.6e-09 65.1 122 38.5
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 6.4e-08 62.0 103 41.7
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 5.4e-07 58.9 86 40.7


User provided reference genes

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