Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08102 Corylus avellana HOM05D007271 ORTHO05D009217 0.0e+00 1093.6 550 100.0
Cfa012560 Carpinus fangiana HOM05D007271 ORTHO05D009217 3.1e-280 968.0 550 88.9
CiPaw.12G070300 Carya illinoinensis HOM05D007271 ORTHO05D009217 5.0e-206 721.5 543 68.3
Dinv29036 Davidia involucrata HOM05D007271 ORTHO05D009217 3.3e-173 612.5 503 64.2
Prupe.5G024200 Prunus persica HOM05D007271 ORTHO05D009217 3.6e-172 609.0 509 62.3
Eucgr.E01257 Eucalyptus grandis HOM05D007271 ORTHO05D009217 8.9e-171 604.4 506 58.5
Hma1.2p1_0635F.1_g193160 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 1.5e-170 603.6 551 57.7
Ciclev10003885m.g Citrus clementina HOM05D007271 ORTHO05D009217 4.9e-169 598.6 517 58.8
GSVIVG01026362001 Vitis vinifera HOM05D007271 ORTHO05D009217 8.3e-169 597.8 530 57.5
PGR042G3154 Punica granatum HOM05D007271 ORTHO05D009217 9.2e-168 594.3 511 56.9
MD00G1000300 Malus domestica HOM05D007271 ORTHO05D009217 4.6e-167 592.0 539 57.9
TAR375G0504 Trochodendron aralioides HOM05D007271 ORTHO05D009217 1.0e-166 590.9 518 59.1
Nitab4.5_0005761g0060 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.5e-165 587.0 536 55.4
Duzib068G0217 Durio zibethinus HOM05D007271 ORTHO05D009217 3.6e-164 582.4 535 57.6
Lalb_Chr05g0215551 Lupinus albus HOM05D007271 ORTHO05D009217 3.6e-164 582.4 514 58.9
Nitab4.5_0000109g0130 Nicotiana tabacum HOM05D007271 ORTHO05D009217 8.1e-164 581.3 502 57.2
Peaxi162Scf00185g01619 Petunia axillaris HOM05D007271 ORTHO05D009217 5.2e-163 578.6 511 57.5
RcHm_v2.0_Chr7g0212901 Rosa chinensis HOM05D007271 ORTHO05D009217 8.9e-163 577.8 507 59.0
FvH4_5g23600 Fragaria vesca HOM05D007271 ORTHO05D009217 2.6e-162 576.2 512 57.4
FAN18G2511 Fragaria x ananassa HOM05D007271 ORTHO05D009217 2.6e-162 576.2 512 57.4
Potri.001G133700 Populus trichocarpa HOM05D007271 ORTHO05D009217 2.6e-162 576.2 543 53.6
Cc08_g04070 Coffea canephora HOM05D007271 ORTHO05D009217 1.7e-161 573.5 505 56.6
FAN13G0287 Fragaria x ananassa HOM05D007271 ORTHO05D009217 2.9e-161 572.8 512 57.0
FAN08G2102 Fragaria x ananassa HOM05D007271 ORTHO05D009217 1.9e-160 570.1 512 56.8
Oeu061071.1 Olea europaea HOM05D007271 ORTHO05D009217 2.4e-160 569.7 529 56.3
FAN18G2097 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.2e-160 569.3 512 56.8
CANSAT21G2130 Cannabis sativa HOM05D007271 ORTHO05D009217 4.1e-160 568.9 538 55.0
Atru.chr6.1575 Acer truncatum HOM05D007271 ORTHO05D009217 1.2e-159 567.4 520 56.5
Lj8A323T49 Lonicera japonica HOM05D007271 ORTHO05D009217 2.1e-159 566.6 528 54.4
Thecc.03G314300 Theobroma cacao HOM05D007271 ORTHO05D009217 6.0e-159 565.1 532 56.6
Peaxi162Scf00408g00227 Petunia axillaris HOM05D007271 ORTHO05D009217 2.3e-158 563.1 508 55.7
Gohir.A12G204300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 1.9e-157 560.1 503 58.6
CAN.G773.8 Capsicum annuum HOM05D007271 ORTHO05D009217 4.3e-157 558.9 511 56.4
Cpa.g.sc104.82 Carica papaya HOM05D007271 ORTHO05D009217 9.6e-157 557.8 520 55.2
Gohir.D12G206700 Gossypium hirsutum HOM05D007271 ORTHO05D009217 9.6e-157 557.8 503 59.0
Oeu001193.1 Olea europaea HOM05D007271 ORTHO05D009217 9.6e-157 557.8 521 54.9
Ca_25147_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 1.2e-156 557.4 537 56.1
Gorai.008G222100 Gossypium raimondii HOM05D007271 ORTHO05D009217 1.2e-156 557.4 503 58.8
Lj2g0009393 Lotus japonicus HOM05D007271 ORTHO05D009217 3.6e-156 555.8 538 55.8
Glyma.01G009700 Glycine max HOM05D007271 ORTHO05D009217 8.1e-156 554.7 516 57.0
Manes.17G011200 Manihot esculenta HOM05D007271 ORTHO05D009217 4.0e-155 552.4 526 56.1
Medtr5g027460 Medicago truncatula HOM05D007271 ORTHO05D009217 4.0e-155 552.4 513 56.3
TWI14G0446 Tripterygium wilfordii HOM05D007271 ORTHO05D009217 4.0e-155 552.4 509 57.4
VMungo1215G2496 Vigna mungo HOM05D007271 ORTHO05D009217 1.2e-154 550.8 504 56.9
PGSC0003DMG400035874 Solanum tuberosum HOM05D007271 ORTHO05D009217 1.5e-154 550.4 510 55.1
Solyc08g076040.2 Solanum lycopersicum HOM05D007271 ORTHO05D009217 3.4e-154 549.3 510 55.1
Sopen08g024690 Solanum pennellii HOM05D007271 ORTHO05D009217 3.4e-154 549.3 510 55.1
Psat2g139720 Pisum sativum HOM05D007271 ORTHO05D009217 4.4e-154 548.9 516 56.0
MBI04_g36029_MAGBIO Magnolia biondii HOM05D007271 ORTHO05D009217 4.9e-153 545.4 497 53.3
Eucgr.D02621 Eucalyptus grandis HOM05D007271 ORTHO05D009217 3.2e-152 542.7 513 53.6
QL12p000436 Quercus lobata HOM05D007271 ORTHO05D009217 3.9e-150 535.8 439 65.6
DCAR_008194 Daucus carota HOM05D007271 ORTHO05D009217 2.5e-149 533.1 524 53.6
Aqoxy7G00878 Aquilegia oxysepala HOM05D007271 ORTHO05D009217 1.3e-148 530.8 507 53.5
Gorai.004G180600 Gossypium raimondii HOM05D007271 ORTHO05D009217 1.8e-147 526.9 531 53.3
DCAR_004256 Daucus carota HOM05D007271 ORTHO05D009217 2.4e-147 526.6 530 53.4
SalBow4G2871 Salvia bowleyana HOM05D007271 ORTHO05D009217 1.2e-146 524.2 512 52.3
Gohir.D08G173300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 1.5e-146 523.9 536 52.6
Lj4g0015364 Lotus japonicus HOM05D007271 ORTHO05D009217 9.9e-146 521.2 489 54.2
ClCG10G001150 Citrullus lanatus HOM05D007271 ORTHO05D009217 9.3e-144 514.6 552 49.5
SalBow8G4630 Salvia bowleyana HOM05D007271 ORTHO05D009217 9.3e-144 514.6 504 52.0
Lsat_1_v5_gn_3_20940 Lactuca sativa HOM05D007271 ORTHO05D009217 1.0e-142 511.1 516 50.8
Gohir.A08G152200 Gossypium hirsutum HOM05D007271 ORTHO05D009217 1.1e-141 507.7 531 51.6
HanXRQChr17g0537681 Helianthus annuus HOM05D007271 ORTHO05D009217 5.6e-141 505.4 510 51.6
Glyma.16G103000 Glycine max HOM05D007271 ORTHO05D009217 7.4e-141 505.0 506 52.4
Hma1.2p1_1486F.1_g286550 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 1.6e-140 503.8 460 57.0
MELO3C013807.2 Cucumis melo HOM05D007271 ORTHO05D009217 2.4e-139 500.0 542 48.9
arahy.Tifrunner.gnm1.ann1.3Y0Q41 Arachis hypogaea HOM05D007271 ORTHO05D009217 1.2e-138 497.7 501 53.7
Psat4g109960 Pisum sativum HOM05D007271 ORTHO05D009217 4.9e-137 492.3 505 51.9
CsaV3_3G001170 Cucumis sativus L. HOM05D007271 ORTHO05D009217 8.4e-137 491.5 542 47.6
Phvul.003G273200 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 2.4e-136 490.0 488 52.7
Actinidia14763 Actinidia chinensis HOM05D007271 ORTHO05D009217 5.5e-136 488.8 511 51.3
Medtr8g071050 Medicago truncatula HOM05D007271 ORTHO05D009217 7.1e-136 488.4 477 52.0
VMungo0251G3497 Vigna mungo HOM05D007271 ORTHO05D009217 4.6e-135 485.7 468 53.8
Phvul.002G132600 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 3.0e-134 483.0 426 59.4
arahy.Tifrunner.gnm1.ann1.CI81A0 Arachis hypogaea HOM05D007271 ORTHO05D009217 1.1e-133 481.1 485 53.2
PGR031G3520 Punica granatum HOM05D007271 ORTHO05D009217 9.0e-131 471.5 471 52.7
TPR.G28964 Trifolium pratense HOM05D007271 ORTHO05D009217 1.3e-129 467.6 504 50.0
Sed0019673 Sechium edule HOM05D007271 ORTHO05D009217 1.1e-128 464.5 539 48.1
PSO717G0049 Papaver somniferum HOM05D007271 ORTHO05D009217 2.2e-124 450.3 514 47.7
unitig_748.g8136 Utricularia gibba HOM05D007271 ORTHO05D009217 1.1e-123 448.0 485 47.6
unitig_747.g21928 Utricularia gibba HOM05D007271 ORTHO05D009217 1.5e-122 444.1 492 47.6
Migut.A00579 Erythranthe guttata HOM05D007271 ORTHO05D009217 2.0e-122 443.7 535 46.2
Zm00001eb268890 Zea mays HOM05D007271 ORTHO05D009217 6.1e-119 432.2 525 44.4
Os06g0113900 Oryza sativa ssp. japonica HOM05D007271 ORTHO05D009217 3.3e-117 426.4 504 45.4
ECA246G0509 Erigeron canadensis HOM05D007271 ORTHO05D009217 4.5e-114 416.0 500 45.4
Nitab4.5_0000809g0020 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.5e-106 391.0 361 55.1
FAN04G0635 Fragaria x ananassa HOM05D007271 ORTHO05D009217 7.4e-101 372.1 407 49.4
ATR0829G091 Amborella trichopoda HOM05D007271 ORTHO05D009217 6.5e-89 332.4 403 45.4
Ciclev10003404m.g Citrus clementina HOM05D007271 ORTHO05D009217 2.8e-76 290.4 507 35.9
unitig_32.g10968 Utricularia gibba HOM05D007271 ORTHO05D009217 1.7e-65 254.6 402 36.8
SEGI_35026 Sequoiadendron giganteum HOM05D007271 ORTHO05D009217 4.3e-64 250.0 485 32.2
HanXRQChr06g0172971 Helianthus annuus HOM05D007271 ORTHO05D009217 1.3e-49 201.8 167 56.3
HanXRQChr06g0172981 Helianthus annuus HOM05D007271 ORTHO05D009217 1.2e-47 195.3 187 49.2
TPR.G9088 Trifolium pratense HOM05D007271 ORTHO05D009217 2.6e-45 187.6 184 54.3
TPR.G9092 Trifolium pratense HOM05D007271 ORTHO05D009217 3.3e-32 144.1 104 67.3
QL12p000442 Quercus lobata HOM05D007271 ORTHO05D009217 3.3e-24 117.5 127 54.3
Ca_22492_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 2.8e-23 114.4 129 48.1
COL.COLO4_16884 Corchorus olitorius HOM05D007271 ORTHO05D009217 2.8e-23 114.4 90 65.6
TPR.G34495 Trifolium pratense HOM05D007271 ORTHO05D009217 4.6e-18 97.1 107 43.9
TPR.G8637 Trifolium pratense HOM05D007271 ORTHO05D009217 3.9e-17 94.0 91 50.5
Oeu061072.1 Olea europaea HOM05D007271 ORTHO05D009217 1.9e-16 91.7 97 50.5
PSO675G5865 Papaver somniferum HOM05D007271 ORTHO05D009217 1.9e-16 91.7 114 46.5
COL.COLO4_16886 Corchorus olitorius HOM05D007271 ORTHO05D009217 5.7e-16 90.1 88 48.9
arahy.Tifrunner.gnm1.ann1.RGNF9W Arachis hypogaea HOM05D007271 ORTHO05D009217 1.7e-12 78.6 103 40.8
arahy.Tifrunner.gnm1.ann1.WVYD0V Arachis hypogaea HOM05D007271 ORTHO05D009217 1.7e-12 78.6 103 40.8
ATR0829G132 Amborella trichopoda HOM05D007271 ORTHO05D009217 1.1e-06 59.3 68 44.1
Zm00001eb364030 Zea mays HOM05D000778 ORTHO05D009217 5.3e-06 57.0 89 33.7


User provided reference genes

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