Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 1.9e-97 359.8 269 100.0
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 9.3e-89 330.9 277 93.9
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 3.8e-82 308.9 269 91.8
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 5.7e-54 215.3 262 79.8
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 1.6e-43 180.6 251 74.9
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 5.0e-42 175.6 254 73.6
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 5.5e-41 172.2 267 70.0
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 2.7e-40 169.9 260 70.4
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 3.0e-39 166.4 251 72.1
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 1.5e-38 164.1 265 68.3
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.6e-38 163.3 251 70.5
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 7.5e-38 161.8 263 68.8
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 4.8e-37 159.1 267 67.4
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 6.3e-37 158.7 248 71.0
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 6.3e-37 158.7 274 65.3
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 4.1e-36 156.0 210 80.5
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.2e-35 154.5 256 67.6
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 2.7e-35 153.3 253 69.2
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 3.5e-35 152.9 269 66.2
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 3.5e-35 152.9 267 65.9
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 4.5e-35 152.5 264 68.2
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 4.5e-35 152.5 262 66.4
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 2.3e-34 150.2 264 67.4
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 2.3e-34 150.2 259 66.0
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 2.9e-34 149.8 263 66.5
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 2.9e-34 149.8 261 65.9
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 4.2e-33 146.0 267 64.4
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 7.2e-33 145.2 248 69.0
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.2e-32 144.4 259 66.0
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 1.2e-32 144.4 306 59.2
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.6e-32 144.1 252 65.9
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.1e-32 143.7 248 68.5
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 6.1e-32 142.1 252 67.9
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.8e-31 140.6 263 64.3
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.0e-31 139.8 248 67.7
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 3.0e-31 139.8 252 67.5
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 6.8e-31 138.7 260 66.5
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.8e-31 138.7 248 67.7
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 6.8e-31 138.7 276 62.7
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 8.8e-31 138.3 252 65.1
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.2e-30 137.9 252 67.1
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.6e-30 136.7 264 62.5
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 5.7e-30 135.6 274 51.5
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 5.7e-30 135.6 266 62.4
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 7.5e-30 135.2 263 64.6
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.3e-29 134.4 248 67.3
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 2.8e-29 133.3 266 62.0
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 6.3e-29 132.1 264 63.3
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.1e-28 131.3 261 62.8
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 2.4e-28 130.2 262 60.7
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 5.4e-28 129.0 272 59.6
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 5.4e-28 129.0 272 59.6
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.2e-27 127.9 277 61.7
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 3.5e-27 126.3 252 61.5
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 3.5e-27 126.3 266 59.0
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 4.5e-27 125.9 250 63.2
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 4.5e-27 125.9 256 64.5
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 1.3e-26 124.4 281 60.5
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 1.3e-26 124.4 223 65.9
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 1.3e-26 124.4 268 63.4
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 2.9e-26 123.2 254 64.6
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 3.8e-26 122.9 196 74.0
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 3.8e-26 122.9 305 58.0
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 5.0e-26 122.5 263 58.6
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 6.6e-26 122.1 303 55.8
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.5e-25 120.9 213 54.9
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.2e-24 117.9 259 61.0
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.2e-24 117.9 259 61.0
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 2.1e-24 117.1 269 60.6
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 2.8e-24 116.7 253 62.8
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 2.8e-24 116.7 253 62.8
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 4.7e-24 115.9 252 61.9
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 4.7e-24 115.9 207 72.5
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 1.8e-23 114.0 265 58.9
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 3.0e-23 113.2 252 62.3
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 5.2e-23 112.5 253 62.1
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 1.2e-22 111.3 87 67.8
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 2.0e-22 110.5 253 60.5
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 3.4e-22 109.8 81 71.6
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 3.4e-22 109.8 249 61.4
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 4.4e-22 109.4 269 59.1
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 4.4e-22 109.4 97 61.9
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 4.4e-22 109.4 88 65.9
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 7.5e-22 108.6 248 62.5
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 9.8e-22 108.2 80 72.5
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 9.8e-22 108.2 84 67.9
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 9.8e-22 108.2 253 61.3
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 1.3e-21 107.8 253 61.3
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 1.3e-21 107.8 279 58.1
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 1.7e-21 107.5 244 63.9
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 4.9e-21 105.9 81 70.4
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.6e-19 100.9 202 71.3
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 1.6e-19 100.9 263 59.3
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 2.7e-19 100.1 265 47.2
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 3.5e-19 99.8 385 45.7
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.0e-18 98.2 267 59.6
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 3.0e-18 96.7 233 60.1
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 8.6e-18 95.1 252 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 1.2e-16 91.3 92 51.1
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 4.7e-16 89.4 247 58.7
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 1.8e-15 87.4 215 44.7
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 3.1e-15 86.7 81 60.5
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 4.0e-15 86.3 247 59.1
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 6.8e-15 85.5 287 54.4
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 2.6e-14 83.6 81 59.3
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 2.2e-13 80.5 80 52.5
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 6.4e-13 79.0 207 32.4
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.4e-12 77.0 75 61.3
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 3.2e-12 76.6 106 50.0
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 7.0e-12 75.5 258 51.6
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 4.3e-09 66.2 195 48.2
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 1.2e-08 64.7 200 59.0
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 1.6e-08 64.3 277 52.7
COL.COLO4_12070 Corchorus olitorius HOM05D006475 ORTHO05D007969 2.1e-08 63.9 102 49.0
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.6e-08 63.2 34 82.4
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 1.4e-07 61.2 63 46.0
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.0e-06 57.4 34 79.4
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 3.4e-06 56.6 34 79.4


User provided reference genes

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