Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 1.4e-31 139.0 70 100.0
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 1.4e-31 139.0 70 100.0
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.9e-24 113.2 91 68.1
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.9e-24 113.2 91 68.1
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.4e-23 112.5 91 68.1
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 2.3e-23 111.7 91 67.0
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 2.3e-23 111.7 91 67.0
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 2.3e-23 111.7 90 67.8
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 3.0e-23 111.3 91 67.0
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 3.9e-23 110.9 88 69.3
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 5.1e-23 110.5 91 65.9
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 5.1e-23 110.5 91 67.0
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 8.8e-23 109.8 91 67.0
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 8.8e-23 109.8 91 65.9
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 1.1e-22 109.4 91 65.9
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.0e-22 108.6 91 65.9
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 2.0e-22 108.6 91 67.0
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 2.6e-22 108.2 91 64.8
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 2.6e-22 108.2 91 64.8
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 3.3e-22 107.8 91 65.9
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 3.3e-22 107.8 91 64.8
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 3.3e-22 107.8 90 64.4
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 3.3e-22 107.8 91 63.7
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 5.7e-22 107.1 91 64.8
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 7.4e-22 106.7 91 63.7
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 7.4e-22 106.7 90 64.4
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 7.4e-22 106.7 91 63.7
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 7.4e-22 106.7 91 65.9
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 7.4e-22 106.7 91 64.8
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 9.7e-22 106.3 88 65.9
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 9.7e-22 106.3 91 65.9
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 9.7e-22 106.3 89 66.3
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 1.3e-21 105.9 89 65.2
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 1.7e-21 105.5 90 63.3
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 1.7e-21 105.5 91 64.8
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 1.7e-21 105.5 91 63.7
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 2.2e-21 105.1 91 63.7
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 2.2e-21 105.1 89 64.0
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 2.2e-21 105.1 88 65.9
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.2e-21 105.1 88 65.9
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.2e-21 105.1 88 65.9
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 2.2e-21 105.1 90 62.2
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.2e-21 105.1 90 64.4
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.8e-21 104.8 91 63.7
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 2.8e-21 104.8 91 64.8
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 2.8e-21 104.8 91 64.8
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 3.7e-21 104.4 89 64.0
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 3.7e-21 104.4 91 62.6
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 4.8e-21 104.0 88 65.9
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 4.8e-21 104.0 88 65.9
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 4.8e-21 104.0 91 63.7
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 6.3e-21 103.6 91 61.5
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 6.3e-21 103.6 90 62.2
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 6.3e-21 103.6 90 63.3
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 8.2e-21 103.2 91 63.7
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 8.2e-21 103.2 86 65.1
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 8.2e-21 103.2 91 61.5
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 8.2e-21 103.2 88 63.6
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 8.2e-21 103.2 87 64.4
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.1e-20 102.8 91 62.6
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 1.4e-20 102.4 89 62.9
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.4e-20 102.4 87 65.5
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 1.4e-20 102.4 89 62.9
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 1.4e-20 102.4 89 61.8
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.8e-20 102.1 89 62.9
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.8e-20 102.1 89 62.9
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.8e-20 102.1 90 62.2
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 2.4e-20 101.7 91 62.6
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 2.4e-20 101.7 87 64.4
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 2.4e-20 101.7 87 64.4
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 2.4e-20 101.7 88 65.9
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 2.4e-20 101.7 91 61.5
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 4.1e-20 100.9 89 60.7
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 4.1e-20 100.9 89 61.8
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 5.3e-20 100.5 91 61.5
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 5.3e-20 100.5 91 61.5
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 9.1e-20 99.8 91 61.5
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 2.6e-19 98.2 86 62.8
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 2.6e-19 98.2 82 65.9
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.6e-19 98.2 87 63.2
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 2.6e-19 98.2 91 60.4
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 2.6e-19 98.2 89 60.7
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 3.4e-19 97.8 91 58.2
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 4.5e-19 97.4 91 59.3
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 5.9e-19 97.1 91 60.4
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 5.9e-19 97.1 88 60.2
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 7.7e-19 96.7 91 59.3
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 7.7e-19 96.7 91 59.3
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.0e-18 96.3 92 59.8
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.0e-18 96.3 89 59.6
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.9e-18 94.7 89 57.3
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 3.8e-18 94.4 82 63.4
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.8e-18 94.4 89 57.3
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 5.0e-18 94.0 88 58.0
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 8.5e-18 93.2 91 57.1
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 1.1e-17 92.8 85 61.2
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 2.5e-17 91.7 87 59.8
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 5.5e-17 90.5 90 57.8
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 5.5e-17 90.5 90 55.6
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 7.2e-17 90.1 89 56.2
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 9.4e-17 89.7 89 57.3
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 1.2e-16 89.4 89 56.2
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 1.2e-16 89.4 89 56.2
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 1.2e-16 89.4 91 56.0
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 1.6e-16 89.0 91 54.9
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 2.1e-16 88.6 91 56.0
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 2.7e-16 88.2 87 54.0
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 2.7e-16 88.2 90 55.6
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 4.7e-16 87.4 91 56.0
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 4.7e-16 87.4 91 56.0
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 6.1e-16 87.0 90 54.4
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 6.1e-16 87.0 91 53.8
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 6.1e-16 87.0 87 55.2
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 8.0e-16 86.7 90 55.6
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 8.0e-16 86.7 92 56.5
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 1.0e-15 86.3 85 55.3
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 1.8e-15 85.5 90 53.3
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 2.3e-15 85.1 91 54.9
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 5.2e-15 84.0 91 52.7
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 6.7e-15 83.6 90 53.3
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 8.8e-15 83.2 89 51.7
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 4.4e-14 80.9 88 52.3
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 4.4e-14 80.9 87 55.2
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 5.7e-14 80.5 88 53.4
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 7.4e-14 80.1 87 52.9
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 7.4e-14 80.1 86 53.5
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 7.4e-14 80.1 86 53.5
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 9.7e-14 79.7 88 51.1
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 1.3e-13 79.3 91 50.5
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 1.7e-13 79.0 88 52.3
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 1.7e-13 79.0 89 52.8
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 2.2e-13 78.6 86 52.3
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 2.2e-13 78.6 91 49.5
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.7e-13 77.8 45 77.8
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.4e-12 75.9 87 50.6
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 1.4e-12 75.9 84 51.2
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 2.4e-12 75.1 84 47.6
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 3.1e-12 74.7 88 52.3
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 4.1e-12 74.3 89 47.2
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 7.0e-12 73.6 87 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 9.1e-12 73.2 84 50.0
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 1.2e-11 72.8 78 51.3
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 3.5e-11 71.2 88 46.6
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.5e-11 70.9 86 45.3
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 4.5e-11 70.9 86 45.3
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 7.7e-11 70.1 82 50.0
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 7.7e-11 70.1 86 45.3
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.3e-10 69.3 91 45.1
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 1.3e-10 69.3 81 46.9
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-10 69.3 81 46.9
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.7e-10 68.9 79 46.8
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.7e-10 68.9 81 48.1
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 3.8e-10 67.8 82 45.1
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 8.5e-10 66.6 84 45.2
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 1.9e-09 65.5 81 46.9
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 7.2e-09 63.5 44 70.5
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 1.6e-08 62.4 43 65.1
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.6e-08 62.4 76 48.7
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.1e-08 62.0 76 44.7
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 2.7e-08 61.6 41 73.2
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 6.1e-08 60.5 45 60.0
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 1.0e-07 59.7 81 44.4
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 1.4e-07 59.3 43 62.8
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 3.0e-07 58.2 82 39.0
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 5.2e-07 57.4 84 42.9
Psat7g208440 Pisum sativum HOM05D000526 ORTHO05D000956 2.6e-06 55.1 94 41.5


User provided reference genes

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