Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 5.2e-110 402.9 206 100.0
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 3.6e-103 380.2 206 95.1
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 1.3e-81 308.5 206 76.7
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 1.3e-76 292.0 206 71.4
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 3.2e-75 287.3 207 71.0
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 2.3e-73 281.2 205 67.8
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 3.3e-72 277.3 206 65.5
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 4.3e-72 276.9 206 65.0
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 2.1e-71 274.6 211 70.6
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 2.4e-70 271.2 203 67.5
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 1.3e-68 265.4 205 62.9
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 4.9e-68 263.5 206 62.6
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 4.9e-68 263.5 204 65.7
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 6.5e-68 263.1 207 65.2
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 7.1e-67 259.6 207 65.7
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 1.6e-66 258.5 203 62.6
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 1.9e-64 251.5 208 62.5
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 7.4e-64 249.6 208 62.0
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 6.3e-63 246.5 206 61.2
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 1.1e-62 245.7 207 60.9
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 1.3e-60 238.8 208 60.1
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.2e-60 238.0 206 59.7
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 5.0e-60 236.9 206 58.3
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 8.5e-60 236.1 204 60.3
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 9.4e-59 232.6 206 58.7
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 1.2e-58 232.3 206 56.3
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 2.1e-58 231.5 205 58.0
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 1.8e-57 228.4 203 57.6
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 2.3e-57 228.0 206 53.9
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 3.9e-57 227.3 206 56.8
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.1e-56 225.7 206 55.8
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 2.0e-56 224.9 206 54.4
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 2.0e-56 224.9 209 55.5
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 2.5e-56 224.6 203 55.2
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 3.3e-56 224.2 206 56.8
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 5.7e-56 223.4 203 56.7
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 1.3e-55 222.2 206 54.4
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 1.3e-55 222.2 206 55.3
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 1.7e-55 221.9 180 61.7
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 4.8e-55 220.3 203 56.2
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 1.1e-54 219.2 207 55.1
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 1.8e-54 218.4 205 55.1
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 1.8e-54 218.4 208 53.8
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 1.2e-53 215.7 203 54.7
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 2.6e-53 214.5 167 66.5
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 5.9e-53 213.4 204 54.9
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 2.9e-52 211.1 164 66.5
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 5.0e-52 210.3 201 53.7
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 6.5e-52 209.9 202 53.0
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 2.5e-51 208.0 208 52.4
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 5.5e-51 206.8 201 53.7
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 9.4e-51 206.1 203 52.7
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 1.2e-50 205.7 165 64.8
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 3.6e-50 204.1 208 51.0
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 1.0e-49 202.6 205 52.2
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 1.0e-49 202.6 211 53.6
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.0e-49 202.6 208 50.5
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 1.8e-49 201.8 206 53.4
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 8.8e-49 199.5 210 51.4
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 2.0e-48 198.4 205 52.7
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 3.3e-48 197.6 203 51.2
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 3.3e-48 197.6 210 51.9
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 5.7e-48 196.8 206 52.4
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 5.7e-48 196.8 205 53.2
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 5.7e-48 196.8 203 52.2
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 1.3e-47 195.7 209 50.2
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 2.2e-47 194.9 209 50.7
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 2.2e-47 194.9 205 52.2
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 2.8e-47 194.5 212 51.9
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.8e-47 194.5 208 49.0
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 6.3e-47 193.4 204 52.5
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 2.4e-46 191.4 170 57.1
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 2.5e-43 181.4 208 47.6
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.2e-43 181.0 205 47.8
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.2e-43 181.0 205 47.8
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 1.0e-41 176.0 134 63.4
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 3.0e-41 174.5 134 62.7
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 3.9e-41 174.1 203 45.8
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 1.5e-40 172.2 160 56.9
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 3.3e-40 171.0 123 66.7
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 1.4e-38 165.6 177 52.0
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 1.2e-37 162.5 186 47.8
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 6.5e-36 156.8 121 64.5
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 4.2e-35 154.1 161 51.6
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 7.2e-35 153.3 116 62.1
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 2.1e-34 151.8 198 45.5
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 4.7e-34 150.6 198 44.9
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 6.1e-34 150.2 133 57.9
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 1.1e-30 139.4 145 52.4
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.4e-25 122.5 124 50.0
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 4.9e-23 114.0 208 35.1
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 3.1e-22 111.3 71 76.1
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 2.7e-21 108.2 207 35.3
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 8.9e-17 93.2 117 44.4
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 1.7e-15 89.0 151 40.4
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 6.3e-15 87.0 94 48.9
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.1e-11 76.3 75 50.7
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 9.5e-11 73.2 101 38.6
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 4.7e-10 70.9 186 28.5
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.8e-09 68.9 201 28.9
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.8e-09 68.9 204 28.9
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 1.8e-09 68.9 197 31.5
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.3e-09 68.6 204 30.4
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 3.1e-09 68.2 193 28.5
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.1e-09 68.2 201 29.9
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 4.0e-09 67.8 187 29.4
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 4.0e-09 67.8 205 31.2
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 6.8e-09 67.0 190 28.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.2e-08 66.2 190 27.9
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 1.2e-08 66.2 185 28.6
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.5e-08 65.9 203 30.0
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 2.0e-08 65.5 185 29.7
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.0e-08 65.5 196 27.6
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.4e-08 64.7 206 28.6
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 3.4e-08 64.7 189 28.6
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 4.4e-08 64.3 175 27.4
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 4.4e-08 64.3 205 26.8
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 4.4e-08 64.3 201 28.4
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 5.8e-08 63.9 189 26.5
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 5.8e-08 63.9 205 26.8
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 5.8e-08 63.9 205 26.3
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 9.8e-08 63.2 179 25.7
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 9.8e-08 63.2 199 29.6
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 9.8e-08 63.2 170 27.6
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 9.8e-08 63.2 205 25.9
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 9.8e-08 63.2 206 27.2
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 9.8e-08 63.2 203 27.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.2e-07 62.0 189 26.5
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 2.9e-07 61.6 198 29.3
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 3.7e-07 61.2 204 25.5
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 3.7e-07 61.2 191 27.2
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 3.7e-07 61.2 194 27.3
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 4.9e-07 60.8 205 27.8
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 4.9e-07 60.8 208 30.3
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 4.9e-07 60.8 202 26.7
Zm00001eb151970 Zea mays HOM05D059268 ORTHO05D009424 4.9e-07 60.8 165 32.1
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 6.4e-07 60.5 197 27.4
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 8.3e-07 60.1 183 30.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.1e-06 59.7 205 25.4
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.1e-06 59.7 190 30.5
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 1.4e-06 59.3 187 27.3
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.4e-06 59.3 97 36.1
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.4e-06 59.3 203 25.1
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 1.4e-06 59.3 195 25.6
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 1.9e-06 58.9 151 29.1
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 2.4e-06 58.5 163 30.7
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 2.4e-06 58.5 200 26.5
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.2e-06 58.2 204 28.4
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 4.1e-06 57.8 202 27.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.1e-06 57.8 195 27.7
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 4.1e-06 57.8 163 31.9
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 4.1e-06 57.8 163 31.9
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 5.4e-06 57.4 188 28.2
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 7.0e-06 57.0 192 26.0
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 7.0e-06 57.0 197 24.9
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 7.0e-06 57.0 194 23.2
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 9.2e-06 56.6 201 27.9
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 9.2e-06 56.6 166 25.9
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 9.2e-06 56.6 193 27.5
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 9.2e-06 56.6 193 25.9
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 9.2e-06 56.6 202 26.7


User provided reference genes

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