Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07999 Corylus avellana HOM05D002945 ORTHO05D003314 2.1e-61 238.8 117 100.0
Cfa010251 Carpinus fangiana HOM05D002945 ORTHO05D003314 9.5e-30 133.7 78 79.5
Haze_23645 Corylus avellana HOM05D002945 ORTHO05D003314 4.7e-29 131.3 78 78.2
CiPaw.13G128100 Carya illinoinensis HOM05D002945 ORTHO05D003314 4.7e-21 104.8 90 60.0
QL04p014093 Quercus lobata HOM05D002945 ORTHO05D003314 6.8e-20 100.9 82 62.2
QL04p014177 Quercus lobata HOM05D002945 ORTHO05D003314 3.4e-19 98.6 82 63.4
CSS0046381 Camellia sinensis var. sinensis HOM05D002945 ORTHO05D003314 8.3e-18 94.0 81 58.0
Dinv32112 Davidia involucrata HOM05D002945 ORTHO05D003314 6.0e-16 87.8 100 51.0
Sabra04G0132900 Salix brachista HOM05D002945 ORTHO05D003314 1.7e-15 86.3 94 51.1
TAR623G0549 Trochodendron aralioides HOM05D002945 ORTHO05D003314 2.3e-15 85.9 110 44.5
Hma1.2p1_0772F.1_g216030 Hydrangea macrophylla HOM05D002945 ORTHO05D003314 1.5e-14 83.2 110 44.5
Lj1C274T3 Lonicera japonica HOM05D002945 ORTHO05D003314 1.5e-14 83.2 99 45.5
Sabra09G0123600 Salix brachista HOM05D002945 ORTHO05D003314 3.3e-14 82.0 91 49.5
Cc02_g10700 Coffea canephora HOM05D002945 ORTHO05D003314 4.3e-14 81.6 78 56.4
Potri.009G158000 Populus trichocarpa HOM05D002945 ORTHO05D003314 5.6e-14 81.3 96 47.9
Manes.06G067900 Manihot esculenta HOM05D002945 ORTHO05D003314 7.3e-14 80.9 88 52.3
Lj1A252T40 Lonicera japonica HOM05D002945 ORTHO05D003314 2.1e-13 79.3 99 43.4
ECA246G3387 Erigeron canadensis HOM05D002945 ORTHO05D003314 4.7e-13 78.2 90 47.8
Nn7g37276 Nelumbo nucifera HOM05D002945 ORTHO05D003314 4.7e-13 78.2 90 48.9
Potri.004G195900 Populus trichocarpa HOM05D002945 ORTHO05D003314 6.2e-13 77.8 87 48.3
HanXRQChr06g0165491 Helianthus annuus HOM05D002945 ORTHO05D003314 8.1e-13 77.4 94 45.7
TWI75G0269 Tripterygium wilfordii HOM05D002945 ORTHO05D003314 1.8e-12 76.3 91 45.1
DCAR_012107 Daucus carota HOM05D002945 ORTHO05D003314 3.1e-12 75.5 118 42.4
Ciclev10018360m.g Citrus clementina HOM05D002945 ORTHO05D003314 4.0e-12 75.1 87 50.6
PSO339G0452 Papaver somniferum HOM05D002945 ORTHO05D003314 4.0e-12 75.1 117 39.3
Atru.chr3.2587 Acer truncatum HOM05D002945 ORTHO05D003314 6.8e-12 74.3 84 48.8
RcHm_v2.0_Chr7g0220241 Rosa chinensis HOM05D002945 ORTHO05D003314 6.8e-12 74.3 96 46.9
Lsat_1_v5_gn_3_8360 Lactuca sativa HOM05D002945 ORTHO05D003314 8.9e-12 73.9 92 42.4
Thecc.09G263200 Theobroma cacao HOM05D002945 ORTHO05D003314 8.9e-12 73.9 89 44.9
COL.COLO4_25285 Corchorus olitorius HOM05D002945 ORTHO05D003314 1.2e-11 73.6 83 44.6
Prupe.6G152400 Prunus persica HOM05D002945 ORTHO05D003314 1.5e-11 73.2 91 47.3
PGR119G0860 Punica granatum HOM05D002945 ORTHO05D003314 2.6e-11 72.4 99 42.4
Aqoxy3G00438 Aquilegia oxysepala HOM05D002945 ORTHO05D003314 4.4e-11 71.6 115 38.3
FAN04G2576 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.4e-11 71.6 79 48.1
SalBow4G2522 Salvia bowleyana HOM05D002945 ORTHO05D003314 4.4e-11 71.6 78 46.2
Glyma.02G273600 Glycine max HOM05D002945 ORTHO05D003314 7.5e-11 70.9 100 42.0
Rhsim01G0197000 Rhododendron simsii HOM05D002945 ORTHO05D003314 9.9e-11 70.5 101 43.6
Prupe.6G113000 Prunus persica HOM05D002945 ORTHO05D003314 1.3e-10 70.1 91 46.2
FvH4_5g28070 Fragaria vesca HOM05D002945 ORTHO05D003314 2.9e-10 68.9 78 47.4
MBI13_g09970_MAGBIO Magnolia biondii HOM05D002945 ORTHO05D003314 4.9e-10 68.2 117 37.6
GSVIVG01037470001 Vitis vinifera HOM05D002945 ORTHO05D003314 1.1e-09 67.0 51 68.6
MD11G1179900 Malus domestica HOM05D002945 ORTHO05D003314 1.9e-09 66.2 114 40.4
Oeu026163.1 Olea europaea HOM05D002945 ORTHO05D003314 1.9e-09 66.2 127 36.2
Gohir.A13G221400 Gossypium hirsutum HOM05D002945 ORTHO05D003314 3.2e-09 65.5 77 42.9
Gohir.D13G225400 Gossypium hirsutum HOM05D002945 ORTHO05D003314 3.2e-09 65.5 77 42.9
Gorai.013G256200 Gossypium raimondii HOM05D002945 ORTHO05D003314 3.2e-09 65.5 77 42.9
Atru.chr3.2016 Acer truncatum HOM05D002945 ORTHO05D003314 4.1e-09 65.1 85 43.5
Peaxi162Scf00982g00013 Petunia axillaris HOM05D002945 ORTHO05D003314 4.1e-09 65.1 82 48.8
VMungo0647G1462 Vigna mungo HOM05D002945 ORTHO05D003314 4.1e-09 65.1 106 39.6
BcaC01g06623 Brassica carinata HOM05D002945 ORTHO05D003314 5.4e-09 64.7 82 46.3
A03p10410 Brassica napus HOM05D002945 ORTHO05D003314 5.4e-09 64.7 87 44.8
BraA03t10353Z Brassica rapa HOM05D002945 ORTHO05D003314 5.4e-09 64.7 87 44.8
C03p11950 Brassica napus HOM05D002945 ORTHO05D003314 7.1e-09 64.3 87 44.8
BolC3t13665H Brassica oleracea HOM05D002945 ORTHO05D003314 7.1e-09 64.3 87 44.8
Lalb_Chr04g0249741 Lupinus albus HOM05D002945 ORTHO05D003314 9.2e-09 63.9 106 36.8
Medtr5g087660 Medicago truncatula HOM05D002945 ORTHO05D003314 9.2e-09 63.9 104 37.5
Sc08g0006510 Simmondsia chinensis HOM05D002945 ORTHO05D003314 1.2e-08 63.5 83 37.3
Rhsim05G0108700 Rhododendron simsii HOM05D002945 ORTHO05D003314 1.6e-08 63.2 99 41.4
Medtr3g465420 Medicago truncatula HOM05D002945 ORTHO05D003314 2.1e-08 62.8 102 38.2
Phvul.008G208200 Phaseolus vulgaris HOM05D002945 ORTHO05D003314 2.1e-08 62.8 101 38.6
A10p19020 Brassica napus HOM05D002945 ORTHO05D003314 3.5e-08 62.0 92 39.1
BraA10t43980Z Brassica rapa HOM05D002945 ORTHO05D003314 3.5e-08 62.0 92 39.1
Sopen11g003920 Solanum pennellii HOM05D002945 ORTHO05D003314 3.5e-08 62.0 77 44.2
THA.LOC104799588 Tarenaya hassleriana HOM05D002945 ORTHO05D003314 3.5e-08 62.0 100 40.0
TPR.G11708 Trifolium pratense HOM05D002945 ORTHO05D003314 4.6e-08 61.6 102 34.3
ATR0665G076 Amborella trichopoda HOM05D002945 ORTHO05D003314 6.0e-08 61.2 84 46.4
Sp6g23490 Schrenkiella parvula HOM05D002945 ORTHO05D003314 6.0e-08 61.2 97 40.2
Solyc11g008070.1 Solanum lycopersicum HOM05D002945 ORTHO05D003314 6.0e-08 61.2 77 44.2
PGSC0003DMG400031074 Solanum tuberosum HOM05D002945 ORTHO05D003314 6.0e-08 61.2 77 44.2
Sed0004934 Sechium edule HOM05D002945 ORTHO05D003314 1.0e-07 60.5 86 40.7
BcaC04g19500 Brassica carinata HOM05D002945 ORTHO05D003314 1.3e-07 60.1 93 38.7
Phvul.002G207700 Phaseolus vulgaris HOM05D002945 ORTHO05D003314 1.3e-07 60.1 114 34.2
Actinidia28059 Actinidia chinensis HOM05D002945 ORTHO05D003314 1.7e-07 59.7 97 38.1
MELO3C019418.2 Cucumis melo HOM05D002945 ORTHO05D003314 1.7e-07 59.7 93 40.9
CAN.G459.28 Capsicum annuum HOM05D002945 ORTHO05D003314 2.3e-07 59.3 77 42.9
Oeu030279.1 Olea europaea HOM05D002945 ORTHO05D003314 2.3e-07 59.3 151 31.1
MSTRG.20300 Avicennia marina HOM05D002945 ORTHO05D003314 3.0e-07 58.9 125 36.0
CARHR191820 Cardamine hirsuta HOM05D002945 ORTHO05D003314 3.0e-07 58.9 97 40.2
CDE04G2256 Ceratophyllum demersum HOM05D002945 ORTHO05D003314 3.0e-07 58.9 82 37.8
Psat6g130720 Pisum sativum HOM05D002945 ORTHO05D003314 3.0e-07 58.9 109 34.9
SGA_v2.0_scaffold62G21374 Striga asiatica HOM05D002945 ORTHO05D003314 3.0e-07 58.9 83 38.6
EL10Ac8g18680 Beta vulgaris HOM05D002945 ORTHO05D003314 3.9e-07 58.5 99 37.4
C09p55030 Brassica napus HOM05D002945 ORTHO05D003314 3.9e-07 58.5 93 39.8
BolC9t58366H Brassica oleracea HOM05D002945 ORTHO05D003314 3.9e-07 58.5 93 39.8
unitig_8.g3484 Utricularia gibba HOM05D002945 ORTHO05D003314 3.9e-07 58.5 102 40.2
CsaV3_3G019360 Cucumis sativus L. HOM05D002945 ORTHO05D003314 5.1e-07 58.2 97 38.1
DCAR_001794 Daucus carota HOM05D002945 ORTHO05D003314 5.1e-07 58.2 138 33.3
arahy.Tifrunner.gnm1.ann1.A3HPXA Arachis hypogaea HOM05D002945 ORTHO05D003314 6.6e-07 57.8 112 36.6
Migut.F01922 Erythranthe guttata HOM05D002945 ORTHO05D003314 6.6e-07 57.8 99 37.4
Thhalv10013957m.g Eutrema salsugineum HOM05D002945 ORTHO05D003314 6.6e-07 57.8 97 37.1
TAR625G1024 Trochodendron aralioides HOM05D002945 ORTHO05D003314 6.6e-07 57.8 142 33.1
unitig_46.g18608 Utricularia gibba HOM05D002945 ORTHO05D003314 6.6e-07 57.8 77 42.9
Ciclev10028588m.g Citrus clementina HOM05D002945 ORTHO05D003314 8.6e-07 57.4 96 38.5
Dinv24203 Davidia involucrata HOM05D002945 ORTHO05D003314 8.6e-07 57.4 141 33.3
Peaxi162Scf00152g00111 Petunia axillaris HOM05D002945 ORTHO05D003314 8.6e-07 57.4 109 34.9
VMungo0251G3142 Vigna mungo HOM05D002945 ORTHO05D003314 8.6e-07 57.4 114 34.2
GSVIVG01029786001 Vitis vinifera HOM05D002945 ORTHO05D003314 8.6e-07 57.4 126 32.5
Os03g0722000 Oryza sativa ssp. japonica HOM05D002945 ORTHO05D003314 1.1e-06 57.0 84 36.9
Actinidia06359 Actinidia chinensis HOM05D002945 ORTHO05D003314 1.5e-06 56.6 69 50.7
Glyma.08G073800 Glycine max HOM05D002945 ORTHO05D003314 1.9e-06 56.2 127 32.3
Nitab4.5_0000078g0060 Nicotiana tabacum HOM05D002945 ORTHO05D003314 1.9e-06 56.2 111 36.9
Glyma.05G118700 Glycine max HOM05D002945 ORTHO05D003314 2.5e-06 55.8 130 32.3
Psat7g097720 Pisum sativum HOM05D002945 ORTHO05D003314 2.5e-06 55.8 89 40.4
PGR142G4325 Punica granatum HOM05D002945 ORTHO05D003314 2.5e-06 55.8 86 41.9
AL6G32600 Arabidopsis lyrata HOM05D002945 ORTHO05D003314 3.3e-06 55.5 98 37.8
AT5G21050 Arabidopsis thaliana HOM05D002945 ORTHO05D003314 3.3e-06 55.5 98 37.8
ECA236G3392 Erigeron canadensis HOM05D002945 ORTHO05D003314 3.3e-06 55.5 147 34.0
Eucgr.I02675 Eucalyptus grandis HOM05D002945 ORTHO05D003314 3.3e-06 55.5 72 48.6
Hma1.2p1_0101F.1_g049240 Hydrangea macrophylla HOM05D002945 ORTHO05D003314 3.3e-06 55.5 110 34.5
Nitab4.5_0001254g0050 Nicotiana tabacum HOM05D002945 ORTHO05D003314 3.3e-06 55.5 111 36.9
arahy.Tifrunner.gnm1.ann1.5D64K0 Arachis hypogaea HOM05D002945 ORTHO05D003314 4.3e-06 55.1 119 31.9
MSTRG.16573 Avicennia marina HOM05D002945 ORTHO05D003314 4.3e-06 55.1 86 40.7
CDE10G0321 Ceratophyllum demersum HOM05D002945 ORTHO05D003314 5.6e-06 54.7 112 33.9
Migut.B00623 Erythranthe guttata HOM05D002945 ORTHO05D003314 5.6e-06 54.7 152 31.6
LjContig00564g0010586 Lotus japonicus HOM05D002945 ORTHO05D003314 5.6e-06 54.7 128 32.8
MD05G1042400 Malus domestica HOM05D002945 ORTHO05D003314 5.6e-06 54.7 148 31.1
Aqoxy2G03233 Aquilegia oxysepala HOM05D002945 ORTHO05D003314 7.3e-06 54.3 147 31.3
CANSAT25G0182 Cannabis sativa HOM05D002945 ORTHO05D003314 7.3e-06 54.3 80 37.5
CDE10G1288 Ceratophyllum demersum HOM05D002945 ORTHO05D003314 7.3e-06 54.3 112 34.8
Peaxi162Scf00003g00362 Petunia axillaris HOM05D002945 ORTHO05D003314 7.3e-06 54.3 113 34.5
Haze_10645 Corylus avellana HOM05D002945 ORTHO05D003314 9.5e-06 53.9 141 31.9
ECA240G1570 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.5e-06 53.9 113 36.3
Lsat_1_v5_gn_9_117401 Lactuca sativa HOM05D002945 ORTHO05D003314 9.5e-06 53.9 114 33.3
PGSC0003DMG400017694 Solanum tuberosum HOM05D002945 ORTHO05D003314 9.5e-06 53.9 111 35.1
TWI23G0721 Tripterygium wilfordii HOM05D002945 ORTHO05D003314 9.5e-06 53.9 120 32.5


User provided reference genes

Program Settings