Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 1.9e-78 295.8 155 100.0
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 7.6e-51 204.1 112 98.2
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 9.7e-14 80.9 72 63.9
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 4.8e-13 78.6 65 66.2
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.1e-12 77.4 68 64.7
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 1.1e-12 77.4 69 62.3
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 2.4e-12 76.3 74 59.5
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 4.1e-12 75.5 68 60.3
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 5.3e-12 75.1 68 58.8
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 6.9e-12 74.7 68 58.8
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 9.0e-12 74.3 68 63.2
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 1.5e-11 73.6 66 60.6
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 2.0e-11 73.2 68 60.3
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 2.0e-11 73.2 68 60.3
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 2.6e-11 72.8 66 60.6
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 2.6e-11 72.8 66 60.6
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 2.6e-11 72.8 70 57.1
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 2.6e-11 72.8 70 57.1
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 2.6e-11 72.8 68 58.8
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 3.4e-11 72.4 71 60.6
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 5.9e-11 71.6 73 57.5
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 5.9e-11 71.6 70 55.7
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 7.7e-11 71.2 88 51.1
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 7.7e-11 71.2 88 51.1
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 7.7e-11 71.2 88 51.1
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 7.7e-11 71.2 67 55.2
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 1.0e-10 70.9 67 58.2
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 1.0e-10 70.9 64 59.4
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 1.7e-10 70.1 68 55.9
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 1.7e-10 70.1 68 55.9
Haze_18987 Corylus avellana HOM05D000226 ORTHO05D000142 1.7e-10 70.1 61 70.5
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 2.9e-10 69.3 71 59.2
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 2.9e-10 69.3 68 60.3
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 3.8e-10 68.9 64 57.8
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 3.8e-10 68.9 63 57.1
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 3.8e-10 68.9 66 57.6
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 5.0e-10 68.6 66 56.1
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 5.0e-10 68.6 63 57.1
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 6.5e-10 68.2 72 58.3
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 6.5e-10 68.2 68 54.4
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 8.5e-10 67.8 72 55.6
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 1.1e-09 67.4 70 57.1
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.9e-09 66.6 72 55.6
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 1.9e-09 66.6 74 54.1
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 2.5e-09 66.2 65 53.8
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 2.5e-09 66.2 70 54.3
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 2.5e-09 66.2 69 56.5
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 3.2e-09 65.9 66 56.1
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 3.2e-09 65.9 68 52.9
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 4.2e-09 65.5 68 51.5
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 7.2e-09 64.7 73 54.8
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 7.2e-09 64.7 72 54.2
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 9.4e-09 64.3 73 53.4
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 1.6e-08 63.5 68 52.9
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 1.6e-08 63.5 68 52.9
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.6e-08 63.5 72 52.8
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 2.1e-08 63.2 74 52.7
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 2.1e-08 63.2 71 53.5
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 2.7e-08 62.8 65 52.3
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.7e-08 62.8 76 47.4
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 3.6e-08 62.4 75 50.7
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 3.6e-08 62.4 69 52.2
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 4.6e-08 62.0 68 51.5
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 4.6e-08 62.0 67 53.7
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 6.1e-08 61.6 47 61.7
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 6.1e-08 61.6 67 55.2
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 7.9e-08 61.2 76 48.7
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 7.9e-08 61.2 61 47.5
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.0e-07 60.8 74 51.4
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 1.4e-07 60.5 76 48.7
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 1.4e-07 60.5 71 49.3
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 1.4e-07 60.5 66 53.0
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 1.4e-07 60.5 67 49.3
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 1.8e-07 60.1 69 50.7
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 1.8e-07 60.1 75 53.3
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 1.8e-07 60.1 75 50.7
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 2.3e-07 59.7 89 43.8
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 2.3e-07 59.7 75 48.0
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 2.3e-07 59.7 75 52.0
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.3e-07 59.7 76 47.4
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 3.0e-07 59.3 73 49.3
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 3.0e-07 59.3 74 51.4
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 3.0e-07 59.3 74 51.4
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 3.0e-07 59.3 74 51.4
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.0e-07 59.3 67 46.3
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 5.1e-07 58.5 67 53.7
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 6.7e-07 58.2 68 50.0
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 8.8e-07 57.8 67 46.3
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 8.8e-07 57.8 67 46.3
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.1e-06 57.4 71 49.3
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-06 57.4 69 46.4
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.1e-06 57.4 67 46.3
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.5e-06 57.0 67 47.8
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 1.5e-06 57.0 73 43.8
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 1.5e-06 57.0 76 44.7
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 1.5e-06 57.0 74 51.4
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-06 57.0 73 43.8
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-06 57.0 73 43.8
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 1.5e-06 57.0 73 43.8
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 1.5e-06 57.0 79 49.4
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.5e-06 57.0 76 46.1
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 2.0e-06 56.6 74 51.4
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 2.0e-06 56.6 75 50.7
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 2.0e-06 56.6 74 51.4
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 2.0e-06 56.6 74 51.4
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 2.0e-06 56.6 75 50.7
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 2.0e-06 56.6 68 51.5
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 2.5e-06 56.2 67 44.8
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 2.5e-06 56.2 67 44.8
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 2.5e-06 56.2 67 44.8
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 3.3e-06 55.8 67 44.8
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 3.3e-06 55.8 67 44.8
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 3.3e-06 55.8 75 50.7
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 3.3e-06 55.8 67 44.8
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 4.3e-06 55.5 76 44.7
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 4.3e-06 55.5 76 44.7
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 7.4e-06 54.7 70 47.1
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 7.4e-06 54.7 76 43.4
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 7.4e-06 54.7 76 43.4
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 7.4e-06 54.7 76 43.4
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 7.4e-06 54.7 76 43.4
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 7.4e-06 54.7 76 43.4
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 7.4e-06 54.7 72 43.1
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 9.7e-06 54.3 77 44.2


User provided reference genes

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