Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 0.0e+00 1939.1 1018 100.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1364.0 1010 73.6
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1332.4 1011 71.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1163.7 1012 63.3
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1140.2 1009 63.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1139.4 1011 61.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1122.8 1011 60.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1122.1 1011 60.6
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1121.7 1017 61.2
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1121.3 1011 60.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1119.4 1011 60.6
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1118.6 1008 62.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 0.0e+00 1111.3 1014 61.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1080.5 1014 59.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1077.4 1017 59.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1076.2 1008 59.1
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 7.0e-312 1074.3 1008 60.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 5.8e-309 1064.3 1008 59.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 1.8e-302 1042.7 858 64.7
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 2.7e-298 1028.9 1009 57.4
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 3.9e-297 1025.0 1012 55.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 1.2e-293 1013.4 1008 57.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 3.4e-293 1011.9 1009 57.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 5.9e-293 1011.1 1011 56.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 7.6e-293 1010.7 1010 55.5
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 6.1e-290 1001.1 1011 56.3
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 7.9e-290 1000.7 1022 55.7
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.1e-288 996.9 1021 55.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 5.7e-288 994.6 1011 55.8
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.1e-286 988.4 1012 56.0
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 5.3e-286 988.0 1013 56.4
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 3.4e-285 985.3 1016 55.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 3.2e-283 978.8 1014 55.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 6.1e-282 974.5 1017 55.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 8.8e-281 970.7 1021 55.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.7e-279 966.5 1008 54.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 2.2e-279 966.1 1008 55.1
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 3.7e-279 965.3 1011 53.8
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 6.3e-279 964.5 1013 55.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 6.9e-278 961.1 1008 54.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 5.9e-277 958.0 1008 54.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 7.7e-277 957.6 1013 55.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.0e-273 947.2 1009 52.9
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 2.3e-273 946.0 1014 54.5
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.3e-273 946.0 865 61.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.0e-272 943.0 1011 53.3
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.7e-271 938.7 1008 55.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 4.8e-271 938.3 1009 53.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 2.4e-270 936.0 1014 54.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 2.0e-269 932.9 1169 49.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.2e-268 929.5 1011 53.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.1e-267 927.2 1036 52.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.2e-267 925.6 1012 52.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 2.1e-266 922.9 1008 53.8
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.6e-266 922.2 1010 52.4
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 2.3e-265 919.5 1014 52.2
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 4.4e-264 915.2 1017 52.9
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 4.1e-262 908.7 1011 50.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 6.1e-258 894.8 1027 52.6
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 1.8e-257 893.3 1010 52.0
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.0e-257 892.5 1025 51.6
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.8e-254 883.2 1013 50.7
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 2.4e-254 882.9 999 52.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.1e-254 882.5 1017 51.7
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.7e-253 879.4 1020 50.7
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.7e-252 876.7 1017 51.3
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 1.1e-251 874.0 1019 49.0
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 5.5e-251 871.7 1009 51.3
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.6e-250 870.2 1016 50.7
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 5.7e-248 861.7 1097 49.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 3.7e-247 859.0 1009 50.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 4.9e-247 858.6 1009 50.4
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 2.4e-246 856.3 1013 49.9
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 2.4e-246 856.3 1009 50.3
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 1.6e-245 853.6 1011 50.3
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 5.9e-245 851.7 1009 50.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.5e-243 847.0 1014 50.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 2.5e-243 846.3 1214 45.6
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 5.7e-240 835.1 1010 48.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 4.7e-234 815.5 766 59.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.3e-220 770.0 1015 46.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.2e-214 749.6 1010 43.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.6e-210 737.3 867 50.6
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.1e-204 715.7 759 53.9
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 4.0e-201 706.1 1008 44.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.2e-183 647.1 686 53.6
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-158 565.1 622 55.0
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.2e-134 483.4 562 50.4
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.7e-127 461.5 448 54.5
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.9e-126 458.0 1010 34.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.8e-124 451.4 385 59.0
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 4.4e-123 446.8 562 47.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.1e-116 425.6 1071 30.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.8e-116 422.9 1065 31.4
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.9e-114 417.5 359 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.8e-108 398.3 1043 31.7
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.3e-106 392.1 733 38.5
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-102 378.6 489 42.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.6e-102 376.7 381 58.5
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.3e-90 339.0 786 35.5
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.2e-89 334.3 566 40.8
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-77 295.8 328 47.9
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-74 285.4 470 40.2
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.0e-71 276.2 471 40.6
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.6e-70 270.4 231 64.9
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.2e-69 266.9 373 44.0
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-61 241.1 432 41.9
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.3e-60 237.3 364 43.4
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.5e-57 227.3 172 70.9
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.8e-53 214.2 137 75.9
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.8e-45 188.3 272 38.2
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.4e-41 176.0 226 48.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 2.1e-40 172.2 337 33.8
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 8.2e-37 160.2 220 43.6
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.5e-35 154.8 109 67.9
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.7e-34 152.5 109 68.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 4.2e-33 147.9 818 25.1
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.7e-32 144.4 133 57.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 6.3e-29 134.0 232 42.7
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.9e-25 122.5 166 45.8
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 7.2e-25 120.6 298 31.2
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.7e-24 118.6 253 37.9
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.0e-24 117.1 161 44.7
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.4e-23 116.3 84 67.9
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-22 113.2 78 73.1
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 9.8e-22 110.2 241 37.3
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.4e-20 106.3 413 29.5
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-18 100.1 95 54.7
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 3.3e-17 95.1 69 73.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-16 92.8 140 42.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.6e-16 91.7 143 42.7
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.0e-15 90.1 91 46.2
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-15 89.7 87 58.6
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 7.5e-14 84.0 946 22.2
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.4e-12 79.7 126 34.9
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.4e-12 79.0 57 64.9
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.5e-11 74.7 144 37.5
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 5.9e-11 74.3 99 41.4
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 7.8e-11 73.9 99 41.4
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.3e-10 73.2 67 56.7
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 2.3e-10 72.4 66 60.6
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.1e-09 70.1 42 76.2
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.3e-09 68.2 87 47.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 5.6e-09 67.8 42 78.6
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 3.6e-08 65.1 62 56.5
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-07 63.2 167 32.3
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-06 59.3 65 50.8
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 2.0e-06 59.3 64 42.2
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.6e-06 58.9 134 35.1


User provided reference genes

Program Settings