Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 2.3e-117 425.6 223 100.0
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 7.3e-47 191.4 235 53.6
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.0e-40 171.0 291 44.7
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 2.3e-40 169.9 234 49.6
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 9.9e-36 154.5 239 46.0
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 1.3e-35 154.1 219 47.9
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 3.8e-35 152.5 224 46.9
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 1.0e-32 144.4 245 42.0
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 2.3e-32 143.3 237 43.0
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.5e-31 140.6 221 47.1
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.5e-31 139.8 265 41.9
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 3.3e-31 139.4 282 40.8
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 4.3e-31 139.0 261 40.6
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 4.8e-30 135.6 242 41.7
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 8.1e-30 134.8 244 39.8
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 2.4e-29 133.3 243 39.5
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 2.4e-29 133.3 219 41.6
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 2.6e-28 129.8 281 37.0
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 4.5e-28 129.0 233 40.3
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 5.8e-28 128.6 212 42.9
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 5.8e-28 128.6 210 45.7
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 2.2e-27 126.7 210 45.7
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 3.8e-27 125.9 220 41.8
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 7.9e-25 118.2 262 37.8
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 1.0e-24 117.9 221 42.5
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 1.0e-24 117.9 221 40.7
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 1.8e-24 117.1 260 41.2
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 2.3e-24 116.7 221 43.0
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 3.0e-24 116.3 212 43.4
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 3.0e-24 116.3 212 43.4
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.9e-24 115.9 225 40.9
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 3.9e-24 115.9 233 38.6
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 5.1e-24 115.5 227 39.6
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.1e-24 115.5 228 39.0
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.9e-23 113.6 228 38.6
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.3e-23 112.8 228 38.6
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 5.6e-23 112.1 245 39.2
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.3e-22 110.9 212 36.8
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.3e-22 110.9 228 39.0
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.6e-22 110.5 209 35.9
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 2.1e-22 110.2 192 42.2
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.8e-22 109.8 216 36.6
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 2.8e-22 109.8 207 38.2
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 4.8e-22 109.0 212 37.3
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 6.2e-22 108.6 241 35.7
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 6.2e-22 108.6 200 40.0
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 6.2e-22 108.6 209 38.3
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 1.4e-21 107.5 215 41.4
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.4e-21 107.5 206 39.8
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 2.4e-21 106.7 206 39.3
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 3.1e-21 106.3 217 36.9
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 4.0e-21 105.9 212 41.0
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 9.0e-21 104.8 194 42.3
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 2.0e-20 103.6 216 34.7
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 3.4e-20 102.8 193 41.5
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 7.6e-20 101.7 257 34.2
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 9.9e-20 101.3 219 36.1
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 9.9e-20 101.3 249 37.8
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 3.8e-19 99.4 254 34.3
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 8.4e-19 98.2 216 35.2
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 8.4e-19 98.2 204 36.8
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.1e-18 97.8 329 31.0
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 2.4e-18 96.7 241 33.6
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 5.5e-18 95.5 227 33.0
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 5.5e-18 95.5 126 47.6
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 5.5e-18 95.5 208 36.5
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 9.3e-18 94.7 202 39.6
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.2e-17 94.4 323 31.3
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 2.1e-17 93.6 207 36.2
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.7e-17 93.2 202 39.1
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 6.0e-17 92.0 228 31.6
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 8.7e-16 88.2 219 35.2
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 8.7e-16 88.2 165 42.4
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 8.7e-16 88.2 245 32.2
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 1.1e-15 87.8 231 34.6
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.5e-15 87.4 277 30.3
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 2.5e-15 86.7 216 33.3
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 5.6e-15 85.5 252 34.5
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 5.6e-15 85.5 224 32.1
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 5.6e-15 85.5 93 50.5
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 9.6e-15 84.7 87 50.6
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.3e-14 84.3 270 31.5
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.1e-14 83.6 317 28.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 2.1e-14 83.6 110 45.5
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 4.8e-14 82.4 218 33.0
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.8e-13 80.5 217 36.4
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 2.4e-13 80.1 146 38.4
Lsat_1_v5_gn_4_110061 Lactuca sativa HOM05D002953 ORTHO05D003249 3.1e-13 79.7 93 48.4
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 5.3e-13 79.0 282 27.7
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 9.0e-13 78.2 222 33.3
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 9.0e-13 78.2 227 31.3
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.2e-12 77.8 245 30.6
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.6e-12 76.6 92 47.8
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 3.4e-12 76.3 254 31.1
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 5.8e-12 75.5 91 48.4
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 7.6e-12 75.1 212 31.1
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 7.6e-12 75.1 212 31.1
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 7.6e-12 75.1 139 36.0
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 1.0e-11 74.7 211 30.8
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 2.2e-11 73.6 311 26.7
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 2.9e-11 73.2 117 41.0
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 2.9e-11 73.2 227 32.2
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 3.8e-11 72.8 224 29.9
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 4.9e-11 72.4 255 32.2
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 8.4e-11 71.6 91 46.2
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.1e-10 71.2 94 46.8
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.4e-10 70.9 87 46.0
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 1.9e-10 70.5 92 46.7
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 1.9e-10 70.5 91 40.7
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 2.5e-10 70.1 91 44.0
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.5e-10 70.1 126 38.1
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 3.2e-10 69.7 80 45.0
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 7.1e-10 68.6 127 37.8
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 9.3e-10 68.2 90 40.0
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 9.3e-10 68.2 72 48.6
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 9.3e-10 68.2 113 38.9
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 2.1e-09 67.0 94 43.6
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 2.1e-09 67.0 89 44.9
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 2.1e-09 67.0 91 41.8
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 2.7e-09 66.6 209 31.6
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 3.5e-09 66.2 266 28.2
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 4.6e-09 65.9 130 39.2
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 6.0e-09 65.5 256 28.9
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 7.9e-09 65.1 90 40.0
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 1.0e-08 64.7 84 45.2
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 2.3e-08 63.5 119 35.3
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 2.3e-08 63.5 103 38.8
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 2.3e-08 63.5 87 39.1
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 3.9e-08 62.8 253 29.6
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 5.1e-08 62.4 100 41.0
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 6.7e-08 62.0 87 39.1
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 8.7e-08 61.6 228 30.3
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 1.1e-07 61.2 89 36.0
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.5e-07 60.8 120 35.8
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.5e-07 60.8 120 36.7
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.5e-07 60.8 120 36.7
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 1.5e-07 60.8 261 25.3
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 1.9e-07 60.5 276 29.3
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 1.9e-07 60.5 121 36.4
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 2.5e-07 60.1 131 30.5
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 2.5e-07 60.1 92 41.3
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 4.3e-07 59.3 293 26.6
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 4.3e-07 59.3 293 26.6
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 4.3e-07 59.3 178 33.7
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 5.7e-07 58.9 92 39.1
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 5.7e-07 58.9 288 26.0
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 5.7e-07 58.9 116 34.5
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 7.4e-07 58.5 94 37.2
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 7.4e-07 58.5 312 25.6
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 7.4e-07 58.5 269 26.8
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 7.4e-07 58.5 91 40.7
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 9.6e-07 58.2 92 38.0
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 1.6e-06 57.4 272 27.6
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 1.6e-06 57.4 272 27.6
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 2.1e-06 57.0 120 37.5
HPP92_017524 Vanilla planifolia HOM05D002953 ORTHO05D003249 2.8e-06 56.6 220 28.2
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 4.8e-06 55.8 91 39.6
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 6.3e-06 55.5 92 39.1
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 8.2e-06 55.1 284 28.5
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 8.2e-06 55.1 132 30.3


User provided reference genes

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