Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 0.0e+00 4312.7 2240 100.0
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 4023.0 2261 93.6
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 0.0e+00 3249.1 2272 76.3
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 0.0e+00 3247.2 2277 75.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 2724.1 2314 64.5
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 0.0e+00 2721.0 2295 64.0
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 0.0e+00 2631.7 2287 62.7
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 0.0e+00 2612.8 2264 62.9
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 0.0e+00 2603.2 2304 62.4
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 2603.2 2282 62.9
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 2600.9 2283 62.6
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 0.0e+00 2593.9 2275 62.3
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 2587.4 2285 61.5
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 2577.7 2285 61.2
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 2577.0 2281 62.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 0.0e+00 2572.7 2289 61.8
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 2567.3 2281 61.8
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 2563.9 2291 61.2
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 2555.4 2287 61.0
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 2543.5 2327 60.2
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 0.0e+00 2542.3 2285 60.8
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 0.0e+00 2512.6 2295 60.1
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 0.0e+00 2506.9 2272 61.2
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 2504.9 2271 61.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 0.0e+00 2466.0 2274 60.2
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 0.0e+00 2462.2 2268 59.9
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2457.6 2291 59.8
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2442.2 2289 59.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2442.2 2306 59.4
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2425.6 2303 59.1
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 0.0e+00 2419.8 2419 56.2
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 0.0e+00 2404.4 2311 58.1
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 0.0e+00 2382.4 2431 55.5
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 0.0e+00 2376.7 2282 57.0
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 0.0e+00 2367.4 2269 57.6
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 0.0e+00 2353.2 2274 56.7
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 0.0e+00 2352.4 2272 56.9
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 0.0e+00 2345.1 2282 57.1
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 0.0e+00 2333.9 2399 55.7
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 0.0e+00 2330.4 2272 56.6
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 0.0e+00 2328.9 2295 56.2
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 0.0e+00 2324.7 2266 56.0
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 2323.5 2265 56.9
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 0.0e+00 2321.2 2274 57.4
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 0.0e+00 2297.3 2272 56.2
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 0.0e+00 2285.4 2257 55.7
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 0.0e+00 2282.3 2268 55.6
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 2276.9 2285 56.2
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 2272.7 2128 60.1
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 0.0e+00 2264.2 2261 55.2
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 0.0e+00 2258.8 2262 56.0
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 0.0e+00 2253.0 2287 54.3
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 0.0e+00 2245.3 2280 55.0
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 2241.5 2351 53.7
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 0.0e+00 2232.2 2284 55.6
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 0.0e+00 2223.0 2265 54.5
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 0.0e+00 2218.7 2270 55.5
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 2216.4 2396 52.8
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 2170.6 2315 53.8
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 0.0e+00 2161.3 2265 52.7
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 2149.4 2320 53.5
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 0.0e+00 2136.7 2297 52.3
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 0.0e+00 2077.8 2287 51.6
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 0.0e+00 2075.8 2280 52.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 0.0e+00 2072.4 2324 50.0
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 2049.2 2269 51.5
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 2031.1 2278 50.5
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 0.0e+00 2020.4 2262 50.1
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 0.0e+00 2018.0 2170 52.8
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 0.0e+00 2010.7 2289 51.2
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 2006.5 1975 56.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 0.0e+00 1984.9 2270 51.1
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1971.1 2261 50.6
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 0.0e+00 1929.8 2278 49.2
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1919.8 2260 49.4
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1911.0 2061 51.6
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1901.7 2259 49.1
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 0.0e+00 1883.6 2259 48.9
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 0.0e+00 1880.1 2323 47.6
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 0.0e+00 1844.7 2263 48.8
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 0.0e+00 1827.4 2271 48.0
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1810.4 2259 47.8
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1793.5 2281 47.2
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1763.4 2272 46.5
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1748.4 2267 46.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1732.6 2283 45.8
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1718.0 2262 45.6
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 0.0e+00 1709.5 2284 44.5
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1698.3 2261 45.1
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 0.0e+00 1680.6 2285 44.5
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1664.0 2278 44.7
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 0.0e+00 1630.2 1915 49.0
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1627.8 2284 44.1
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1618.2 2270 44.6
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1607.8 2261 44.5
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1591.6 2294 43.6
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1556.2 2288 42.8
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1549.6 2268 43.5
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 0.0e+00 1501.5 1522 55.8
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1479.2 1900 47.5
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 1278.5 1322 54.6
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 0.0e+00 1251.5 1355 50.5
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 0.0e+00 1198.0 2395 33.8
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 0.0e+00 1184.9 1002 63.8
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1178.3 1666 43.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 0.0e+00 1171.0 1249 52.0
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1170.6 1666 43.2
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 0.0e+00 1168.7 2230 34.1
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 0.0e+00 1159.8 1309 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.6e-295 1020.8 2202 32.2
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.8e-294 1017.3 638 86.1
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 3.7e-292 1009.6 1055 53.5
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.9e-288 997.3 2051 35.3
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 9.5e-288 995.0 1339 43.3
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.9e-276 956.1 993 53.9
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.9e-276 956.1 993 53.9
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 3.4e-269 933.3 965 54.5
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 5.8e-269 932.6 2197 32.6
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.6e-229 800.8 878 52.8
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 7.5e-200 703.0 996 43.7
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 1.7e-199 701.8 1040 43.0
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 8.6e-196 689.5 844 48.6
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 1.2e-189 669.1 1413 35.1
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 8.9e-177 626.3 960 39.4
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 9.3e-166 589.7 574 59.1
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 6.2e-154 550.4 874 41.3
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 2.8e-130 471.9 442 58.4
CANSAT78G0886 Cannabis sativa HOM05D003115 ORTHO05D003595 3.2e-126 458.4 376 62.0
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 9.1e-121 440.3 402 58.5
BcaC05g26358 Brassica carinata HOM05D003115 ORTHO05D003595 1.3e-114 419.9 505 49.5
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.2e-114 419.1 1125 32.7
BolC5t31100H Brassica oleracea HOM05D003115 ORTHO05D003595 9.1e-113 413.7 779 37.1
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.3e-111 409.8 1091 32.4
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 2.7e-109 402.1 452 50.9
CiPaw.14G076400 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.2e-99 370.2 309 68.0
Cc00_g35730 Coffea canephora HOM05D003115 ORTHO05D003595 5.2e-92 344.7 326 57.4
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 1.1e-89 337.0 1742 23.8
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 1.1e-78 300.4 471 41.4
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 8.9e-76 290.8 1235 25.3
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 1.7e-66 260.0 1280 23.0
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 1.7e-55 223.4 243 49.8
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 1.4e-52 213.8 250 48.4
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 4.4e-51 208.8 774 26.6
CDE07G1385 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.4e-49 203.0 221 48.0
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.7e-48 199.5 253 45.1
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 2.1e-45 189.9 276 42.4
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 3.6e-45 189.1 669 27.1
Cpa.g.c46004 Carica papaya HOM05D003115 ORTHO05D003595 3.4e-43 182.6 135 68.9
Rhsim07G0171200 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.6e-43 181.4 197 54.8
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 4.9e-42 178.7 312 34.3
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.4e-36 160.6 225 48.4
Psat3g191280 Pisum sativum HOM05D003115 ORTHO05D003595 2.0e-35 156.8 171 55.6
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.5e-35 155.6 193 47.2
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 7.6e-35 154.8 103 80.6
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 7.6e-35 154.8 86 91.9
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 2.2e-34 153.3 81 96.3
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 3.8e-34 152.5 120 63.3
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 1.1e-33 151.0 179 49.2
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 2.7e-32 146.4 179 46.4
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.5e-32 146.0 221 38.0
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 8.7e-31 141.4 102 75.5
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.7e-26 127.1 218 41.3
Actinidia30876 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.2e-26 126.7 132 53.0
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 3.2e-25 122.9 141 46.8
Zm00001eb092010 Zea mays HOM05D003115 ORTHO05D029342 1.0e-23 117.9 162 40.7
Zm00001eb154910 Zea mays HOM05D003115 ORTHO05D029342 1.8e-23 117.1 162 40.7
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 3.8e-18 99.4 129 45.0
Haze_25244 Corylus avellana HOM05D003115 ORTHO05D003595 1.9e-17 97.1 52 98.1
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 1.9e-14 87.0 209 31.1
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.1e-12 79.7 204 30.4
RcHm_v2.0_Chr2g0155431 Rosa chinensis HOM05D003115 ORTHO05D003595 5.3e-12 79.0 234 30.8
Actinidia30875 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.5e-11 77.4 72 58.3
SEGI_28450 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 3.8e-10 72.8 94 42.6
RcHm_v2.0_Chr6g0271321 Rosa chinensis HOM05D000001 ORTHO05D010702 1.9e-09 70.5 64 64.1
Actinidia30874 Actinidia chinensis HOM05D003115 ORTHO05D003595 3.2e-09 69.7 42 78.6
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 3.2e-09 69.7 95 40.0
PGSC0003DMG400007745 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.2e-09 69.3 56 55.4
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 5.7e-06 58.9 40 60.0


User provided reference genes

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