Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 6.9e-70 267.3 146 100.0
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 1.8e-38 162.9 144 69.4
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 2.9e-36 155.6 147 68.7
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 6.3e-31 137.9 146 61.0
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 2.7e-26 122.5 141 50.4
MD14G1167200 Malus domestica HOM05D007617 ORTHO05D007195 1.2e-21 107.1 124 48.4
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 2.6e-21 105.9 141 48.9
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 3.8e-20 102.1 142 47.2
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 2.5e-19 99.4 142 43.7
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 2.5e-19 99.4 148 50.0
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 1.6e-18 96.7 146 52.1
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 4.7e-18 95.1 147 42.9
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 1.0e-17 94.0 143 46.9
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 6.7e-17 91.3 147 42.9
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.0e-16 89.7 143 44.8
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 3.3e-16 89.0 150 42.0
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 3.3e-16 89.0 142 41.5
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.4e-16 88.6 145 46.2
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 3.7e-15 85.5 143 42.7
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 4.8e-15 85.1 143 40.6
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 4.8e-15 85.1 143 42.7
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 6.3e-15 84.7 145 46.2
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.1e-14 84.0 145 45.5
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.1e-14 84.0 142 47.9
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.8e-14 83.2 148 46.6
Gohir.A12G186700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 2.4e-14 82.8 148 46.6
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.3e-14 81.6 143 41.3
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.2e-13 80.5 128 45.3
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 3.5e-13 79.0 142 45.1
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 5.9e-13 78.2 150 39.3
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 7.7e-13 77.8 143 45.5
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.0e-12 77.4 143 40.6
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 1.0e-12 77.4 142 39.4
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 2.2e-12 76.3 143 40.6
THA.LOC109117150 Tarenaya hassleriana HOM05D007617 ORTHO05D007195 5.0e-12 75.1 143 46.9
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 3.2e-11 72.4 145 44.1
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 5.5e-11 71.6 148 48.6
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 7.2e-11 71.2 144 38.9
Gohir.D09G052996 Gossypium hirsutum HOM05D011792 ORTHO05D007195 9.4e-11 70.9 123 38.2
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 1.2e-10 70.5 145 44.1
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 3.6e-10 68.9 147 46.3
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 8.0e-10 67.8 144 36.8
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 1.0e-09 67.4 144 37.5
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 1.0e-09 67.4 144 38.2
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.8e-09 66.6 143 38.5
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 1.8e-09 66.6 146 33.6
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.8e-09 66.6 148 39.9
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 6.7e-09 64.7 142 43.0
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 6.7e-09 64.7 148 36.5
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.2e-08 63.9 143 38.5
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 1.5e-08 63.5 146 37.7
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.5e-08 63.5 142 37.3
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.5e-08 63.5 142 37.3
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.5e-08 63.5 142 35.9
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 2.0e-08 63.2 146 32.9
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 2.0e-08 63.2 144 42.4
Gorai.008G203500 Gossypium raimondii HOM05D011792 ORTHO05D007195 2.6e-08 62.8 121 37.2
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 3.3e-08 62.4 147 42.2
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 4.4e-08 62.0 145 36.6
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 5.7e-08 61.6 144 36.1
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 7.5e-08 61.2 156 34.0
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 9.7e-08 60.8 151 36.4
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 1.7e-07 60.1 127 36.2
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 1.7e-07 60.1 147 42.9
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 2.2e-07 59.7 146 32.9
Eucgr.K02773 Eucalyptus grandis HOM05D007617 ORTHO05D007195 2.8e-07 59.3 146 41.8
Gohir.A10G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 2.8e-07 59.3 107 36.4
Gohir.A02G151400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.8e-07 58.5 107 36.4
Gohir.D06G135800 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.8e-07 58.5 107 36.4
Gohir.D07G119900 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.8e-07 58.5 107 36.4
Gohir.D13G230300 Gossypium hirsutum HOM05D011792 ORTHO05D007195 4.8e-07 58.5 107 36.4
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 4.8e-07 58.5 148 34.5
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 8.2e-07 57.8 168 33.9
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.1e-06 57.4 150 36.7
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 1.4e-06 57.0 148 37.2
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 2.4e-06 56.2 142 35.9
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 2.4e-06 56.2 143 35.0
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 3.1e-06 55.8 148 36.5
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 3.1e-06 55.8 146 33.6
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 3.1e-06 55.8 143 35.0
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 4.1e-06 55.5 143 35.0
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 5.3e-06 55.1 71 47.9
Gohir.A11G147000 Gossypium hirsutum HOM05D011792 ORTHO05D007195 7.0e-06 54.7 107 35.5
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 7.0e-06 54.7 150 35.3


User provided reference genes

Program Settings