Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 0.0e+00 2303.9 1188 100.0
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 2036.9 1193 90.4
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 0.0e+00 1484.9 1195 67.6
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 0.0e+00 1328.5 1166 65.3
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1151.0 1217 55.7
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1130.5 1211 58.1
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1125.9 1201 56.2
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 0.0e+00 1119.0 1223 56.6
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1115.9 1202 56.1
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 1090.1 1190 57.1
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1087.8 1227 54.9
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1077.0 1199 54.2
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.6e-311 1073.2 1280 52.1
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.2e-308 1063.5 1198 52.8
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.0e-305 1051.2 1255 53.8
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 3.1e-301 1038.9 1168 52.1
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 5.8e-300 1034.6 1203 52.2
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 6.4e-299 1031.2 1197 50.6
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.3e-295 1017.7 1013 57.6
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 6.8e-293 1011.1 1201 50.4
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 9.2e-290 1000.7 1242 51.4
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.5e-287 993.4 1248 51.0
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.9e-287 993.0 1203 50.8
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 4.3e-287 991.9 1222 50.2
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 9.5e-287 990.7 1158 50.9
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 8.1e-286 987.6 1218 49.5
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 6.4e-283 978.0 1191 51.3
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 3.3e-279 965.7 1199 50.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 7.6e-276 954.5 1246 48.2
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 3.5e-273 945.7 1208 48.1
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.7e-272 943.3 1196 48.5
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 3.4e-268 929.1 1193 48.6
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 4.6e-265 918.7 1202 47.6
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 7.4e-263 911.4 1223 47.1
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.3e-262 910.6 1202 47.5
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.3e-261 905.2 938 53.7
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.5e-252 877.1 1214 46.2
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 4.5e-252 875.5 1252 45.4
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 2.5e-250 869.8 1212 45.3
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 3.5e-249 865.9 1218 45.2
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.9e-247 860.1 1204 44.9
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 2.2e-246 856.7 1212 45.5
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 1.8e-245 853.6 1210 46.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 2.4e-245 853.2 1217 45.9
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.7e-243 847.0 1231 44.5
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 2.2e-243 846.7 1178 44.9
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 3.1e-237 826.2 999 49.9
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 5.3e-237 825.5 1239 44.6
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 4.5e-236 822.4 1163 44.2
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.7e-235 820.5 1201 46.1
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 2.2e-235 820.1 1201 45.0
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 4.2e-234 815.8 1202 43.7
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 9.4e-234 814.7 1221 43.7
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 9.7e-231 804.7 1194 44.3
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.7e-230 803.9 1186 44.1
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 2.2e-230 803.5 1217 44.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 2.8e-230 803.1 1203 43.9
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 7.0e-229 798.5 1225 43.4
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 1.2e-228 797.7 1199 43.9
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 6.1e-225 785.4 1241 43.2
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.4e-224 784.3 1196 42.1
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.8e-224 783.9 1223 43.2
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 4.8e-222 775.8 588 65.8
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.0e-219 768.1 587 65.9
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 3.2e-218 763.1 1200 43.6
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 6.8e-216 755.4 1198 42.4
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 6.8e-216 755.4 1221 40.9
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.2e-215 754.6 998 45.1
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 3.4e-215 753.1 1167 43.1
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 7.5e-215 751.9 1161 42.8
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 3.1e-213 746.5 1201 42.5
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 1.7e-211 740.7 1200 42.6
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 3.8e-211 739.6 956 44.9
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 5.0e-211 739.2 1212 42.2
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.2e-209 734.6 1104 43.8
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 2.1e-209 733.8 972 44.5
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 4.7e-209 732.6 1184 41.0
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 8.0e-209 731.9 1197 41.7
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.4e-208 731.1 1195 40.0
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.2e-207 728.0 1169 42.0
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.4e-207 726.5 838 50.7
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 9.8e-207 724.9 1191 42.1
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 2.2e-206 723.8 1156 41.2
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.9e-206 722.6 1165 42.4
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 8.3e-206 721.8 1027 45.1
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.4e-205 720.3 1105 43.0
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 1.1e-202 711.4 1092 43.6
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 9.5e-202 708.4 1111 43.1
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.0e-200 704.9 1175 40.1
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 2.3e-200 703.7 1174 40.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.9e-200 701.8 1220 42.7
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 3.4e-199 699.9 1184 40.2
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 4.4e-199 699.5 1234 39.5
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 5.4e-197 692.6 584 59.9
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.6e-188 664.5 1194 42.3
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 8.9e-184 648.7 1089 39.0
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 4.9e-182 642.9 1211 37.4
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 4.1e-181 639.8 1162 38.7
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 4.9e-174 616.3 599 52.3
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.4e-174 615.9 1116 39.2
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 3.2e-165 587.0 963 42.3
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 6.9e-144 516.2 1239 33.9
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.8e-143 513.1 512 54.7
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.0e-139 500.7 946 41.9
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.0e-134 485.7 931 38.6
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.9e-133 481.5 341 68.9
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 3.9e-131 473.8 448 54.2
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 5.0e-126 456.8 767 37.3
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 5.1e-123 446.8 680 41.2
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 7.4e-122 443.0 826 37.7
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.1e-117 429.1 594 43.1
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 6.7e-115 419.9 533 42.8
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 2.0e-111 408.3 563 42.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 6.3e-105 386.7 833 37.2
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 1.4e-80 305.8 255 62.7
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.3e-70 271.9 249 55.8
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 5.6e-69 267.3 740 32.7
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.6e-68 265.8 784 31.4
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 5.3e-35 154.5 629 30.0
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.0e-34 152.5 275 37.5
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 8.4e-33 147.1 651 29.8
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.9e-19 100.9 147 48.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.6e-18 99.0 73 67.1
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.9e-17 95.5 194 32.5
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.5e-17 94.0 195 35.4
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.9e-16 92.8 149 47.7
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 3.2e-16 92.0 115 44.3
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 2.7e-15 89.0 69 62.3
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 2.7e-15 89.0 55 69.1
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 6.1e-15 87.8 93 48.4
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 2.3e-14 85.9 51 70.6
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 6.7e-14 84.3 55 65.5
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.1e-13 83.6 159 46.5


User provided reference genes

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