Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 0.0e+00 1102.0 619 100.0
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.7e-231 806.2 620 79.8
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.4e-188 662.9 618 65.2
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.7e-176 622.9 628 62.7
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.6e-171 606.3 621 61.7
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.6e-168 597.0 612 59.6
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.3e-165 587.4 610 58.4
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.2e-161 572.8 612 57.5
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.2e-161 571.6 611 57.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 4.7e-160 568.9 614 57.7
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.2e-159 565.5 626 58.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.2e-158 564.3 609 57.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.4e-156 556.6 614 54.9
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 9.1e-156 554.7 619 56.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.9e-154 549.7 622 58.0
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.9e-153 547.0 611 56.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.0e-151 539.7 617 55.8
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 7.5e-150 535.0 616 56.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.3e-146 524.2 616 54.7
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 2.0e-142 510.4 545 57.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 4.9e-141 505.8 621 53.8
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.3e-141 505.0 603 54.4
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.4e-140 504.2 623 54.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.4e-140 504.2 621 53.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.2e-140 501.5 620 53.5
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-139 501.1 621 53.5
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.2e-139 501.1 615 53.2
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.9e-139 498.8 621 52.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.8e-138 496.1 619 52.8
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.8e-138 496.1 617 52.8
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.8e-136 490.0 602 53.5
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.6e-136 489.6 621 52.2
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 5.2e-135 485.7 596 51.5
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.5e-134 484.2 617 52.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.0e-134 483.8 617 51.9
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.1e-132 478.0 548 55.5
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.2e-132 476.5 587 54.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 7.0e-132 475.3 605 52.2
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.0e-131 473.8 638 50.2
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.7e-130 470.7 620 50.0
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.9e-130 469.5 612 50.2
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 6.6e-130 468.8 621 50.9
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 8.6e-130 468.4 620 49.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-127 461.5 623 51.2
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 3.1e-127 459.9 621 49.9
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 9.8e-126 454.9 612 50.5
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.7e-125 454.1 611 50.4
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.7e-125 454.1 616 47.4
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 8.3e-125 451.8 620 50.2
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.9e-124 450.7 609 49.3
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.0e-123 447.2 604 49.5
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 4.6e-123 446.0 617 48.9
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.5e-121 441.0 626 50.2
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.1e-119 433.3 622 48.2
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.2e-118 431.4 623 49.9
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.2e-118 431.4 598 47.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 5.8e-118 429.1 619 49.3
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 7.5e-118 428.7 616 47.7
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.3e-117 427.9 617 48.0
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.7e-117 427.6 622 47.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 8.3e-117 425.2 614 46.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.9e-116 424.1 602 47.7
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 7.1e-116 422.2 624 47.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.6e-115 419.5 600 46.8
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.6e-115 419.5 642 46.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.7e-114 417.5 617 48.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.3e-114 417.2 629 45.8
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.5e-113 414.5 623 44.9
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.5e-113 413.7 613 44.7
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.5e-113 413.7 614 49.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.6e-112 411.0 613 46.0
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 3.6e-112 409.8 614 45.1
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.1e-111 406.8 618 44.8
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.6e-110 403.7 588 46.8
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 7.1e-108 395.6 610 47.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-107 394.0 602 46.5
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.0e-106 391.7 619 47.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.7e-106 391.0 620 46.3
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.3e-106 390.6 619 46.8
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.0e-106 390.2 619 43.5
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.1e-106 389.4 593 44.4
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.1e-104 384.0 614 46.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 2.8e-104 383.6 638 44.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-104 383.3 593 44.2
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.4e-103 381.3 510 52.5
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 4.0e-103 379.8 613 42.9
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.0e-102 377.5 617 44.7
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 7.6e-102 375.6 616 44.3
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 4.9e-101 372.9 621 45.2
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-100 371.7 622 46.0
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.4e-100 369.4 477 50.9
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.7e-99 367.1 652 42.3
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.0e-99 365.9 622 44.2
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.7e-98 364.4 614 42.8
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.9e-98 363.2 636 43.1
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 5.1e-98 362.8 612 42.0
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 6.2e-96 355.9 638 41.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-95 355.1 611 42.4
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.3e-95 352.8 636 42.0
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 5.3e-95 352.8 629 41.8
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.4e-94 350.1 636 42.0
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 5.8e-94 349.4 637 41.1
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 7.6e-94 349.0 638 41.8
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 4.9e-93 346.3 629 41.8
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.1e-92 345.1 601 42.3
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.1e-92 345.1 638 41.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.4e-92 344.7 601 42.3
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.2e-92 343.6 621 41.5
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 3.9e-90 336.7 633 40.4
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 5.1e-90 336.3 636 40.6
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.3e-89 333.6 621 40.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 4.3e-89 333.2 624 43.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-87 328.6 432 47.2
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-87 327.8 598 39.5
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.5e-86 324.7 638 39.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.0e-86 324.3 614 39.6
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.6e-86 323.9 625 39.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.5e-86 323.2 634 39.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 4.5e-86 323.2 432 52.3
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.6e-86 322.4 638 39.5
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.7e-85 321.2 614 39.4
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.9e-85 320.5 510 46.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.4e-84 317.4 431 52.0
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.9e-83 312.4 641 38.1
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 8.2e-80 302.4 621 38.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.2e-76 290.0 644 41.5
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.1e-73 282.0 642 38.8
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-70 271.9 608 38.8
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.7e-69 268.1 202 72.3
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 9.3e-68 262.3 334 54.8
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.1e-66 256.5 274 61.7
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 3.3e-65 253.8 591 38.4
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.2e-64 251.1 451 43.2
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.1e-59 234.6 609 35.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 3.3e-57 227.3 340 45.3
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 2.2e-56 224.6 392 43.1
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.8e-55 221.5 607 34.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 9.1e-55 219.2 598 34.4
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.2e-54 218.8 684 33.6
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.5e-52 211.1 546 33.7
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 2.9e-45 187.6 539 33.6
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 8.5e-45 186.0 280 44.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.4e-42 178.7 495 30.9
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.8e-42 178.3 519 33.7
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 6.7e-42 176.4 541 32.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.1e-39 169.1 479 32.6
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 5.3e-39 166.8 302 39.1
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 7.0e-39 166.4 459 34.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 9.4e-36 156.0 196 57.7
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.6e-35 154.1 296 37.5
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.7e-35 153.7 461 32.8
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.8e-34 149.8 300 40.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.8e-34 149.4 300 40.3
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.5e-33 148.7 261 40.2
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.6e-30 138.7 282 35.5
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.6e-29 133.3 187 42.2
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.5e-28 131.3 581 29.3
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 3.6e-27 127.5 216 44.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-26 125.9 209 40.7
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.5e-25 122.1 282 37.9
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.4e-25 120.6 220 39.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.7e-25 120.2 225 41.3
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 7.5e-25 119.8 142 54.2
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.1e-23 114.4 120 58.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 7.8e-22 109.8 220 45.0
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.3e-21 109.0 119 55.5
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 6.6e-21 106.7 142 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 8.6e-21 106.3 140 45.0
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.8e-18 98.6 110 46.4
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 3.0e-13 81.3 123 43.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.8e-11 74.7 42 83.3
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.9e-07 62.0 72 51.4
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.4e-07 61.6 45 62.2
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 5.4e-07 60.5 163 32.5


User provided reference genes

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