Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07460 Corylus avellana HOM05D001228 ORTHO05D002377 3.6e-118 428.3 224 100.0
Cfa019107 Carpinus fangiana HOM05D001228 ORTHO05D002377 3.3e-79 298.9 250 68.0
CiPaw.12G025700 Carya illinoinensis HOM05D001228 ORTHO05D002377 7.6e-44 181.4 248 48.4
QL10p011886 Quercus lobata HOM05D001228 ORTHO05D002377 1.2e-41 174.1 293 43.7
Prupe.5G174700 Prunus persica HOM05D001228 ORTHO05D002377 6.0e-41 171.8 219 47.9
ClCG06G016960 Citrullus lanatus HOM05D001228 ORTHO05D002377 5.3e-37 158.7 260 41.5
Sed0014749 Sechium edule HOM05D001228 ORTHO05D002377 3.2e-34 149.4 263 41.1
Cpa.g.sc124.52 Carica papaya HOM05D001228 ORTHO05D002377 4.2e-34 149.1 223 45.7
MELO3C017095.2 Cucumis melo HOM05D001228 ORTHO05D002377 4.2e-34 149.1 273 40.3
MD06G1175400 Malus domestica HOM05D001228 ORTHO05D002377 8.1e-30 134.8 262 39.3
CANSAT80G2671 Cannabis sativa HOM05D001228 ORTHO05D002377 2.0e-28 130.2 262 38.9
CiPaw.11G027300 Carya illinoinensis HOM05D001228 ORTHO05D002377 2.0e-28 130.2 247 39.7
MD14G1182200 Malus domestica HOM05D001228 ORTHO05D002377 2.6e-28 129.8 209 41.1
RcHm_v2.0_Chr7g0193681 Rosa chinensis HOM05D001228 ORTHO05D002377 2.6e-28 129.8 232 41.8
Manes.14G066500 Manihot esculenta HOM05D001228 ORTHO05D002377 1.1e-26 124.4 247 39.7
TWI60G0515 Tripterygium wilfordii HOM05D001228 ORTHO05D002377 1.9e-26 123.6 223 40.4
Duzib084G1137 Durio zibethinus HOM05D001228 ORTHO05D002377 5.5e-26 122.1 239 40.6
Potri.015G075100 Populus trichocarpa HOM05D001228 ORTHO05D002377 5.5e-26 122.1 236 38.1
Manes.06G104300 Manihot esculenta HOM05D001228 ORTHO05D002377 6.0e-25 118.6 248 39.9
Sed0026305 Sechium edule HOM05D001228 ORTHO05D002377 6.0e-25 118.6 232 39.2
FAN13G3335 Fragaria x ananassa HOM05D001228 ORTHO05D002377 2.5e-23 113.2 238 39.1
Psat4g057760 Pisum sativum HOM05D001228 ORTHO05D002377 2.5e-23 113.2 235 37.9
Sabra15G0098900 Salix brachista HOM05D001228 ORTHO05D002377 3.3e-23 112.8 235 38.3
PGR083G2746 Punica granatum HOM05D001228 ORTHO05D002377 9.6e-23 111.3 226 37.6
TWI81G0373 Tripterygium wilfordii HOM05D001228 ORTHO05D002377 2.1e-22 110.2 220 37.3
TWI81G0407 Tripterygium wilfordii HOM05D001228 ORTHO05D002377 2.1e-22 110.2 220 37.3
VMungo1309G1620 Vigna mungo HOM05D001228 ORTHO05D002377 4.8e-22 109.0 217 39.2
Potri.012G079800 Populus trichocarpa HOM05D001228 ORTHO05D002377 1.1e-21 107.8 218 40.4
COL.COLO4_04602 Corchorus olitorius HOM05D001228 ORTHO05D002377 1.8e-21 107.1 232 38.4
Ciclev10021392m.g Citrus clementina HOM05D001228 ORTHO05D002377 3.1e-21 106.3 249 37.8
FvH4_5g05230 Fragaria vesca HOM05D001228 ORTHO05D002377 1.2e-20 104.4 244 36.5
Medtr4g106940 Medicago truncatula HOM05D001228 ORTHO05D002377 1.2e-20 104.4 239 34.7
FAN18G2165 Fragaria x ananassa HOM05D001228 ORTHO05D002377 3.4e-20 102.8 243 36.2
Psat5g114520 Pisum sativum HOM05D001228 ORTHO05D002377 5.9e-20 102.1 219 40.2
Atru.chr9.2457 Acer truncatum HOM05D001228 ORTHO05D002377 1.0e-19 101.3 233 35.2
Medtr3g078010 Medicago truncatula HOM05D001228 ORTHO05D002377 1.3e-19 100.9 239 37.7
Thecc.03G010800 Theobroma cacao HOM05D001228 ORTHO05D002377 2.2e-19 100.1 245 35.9
Lj4g0000330 Lotus japonicus HOM05D001228 ORTHO05D002377 8.5e-19 98.2 230 37.0
Ca_16184_v3 Cicer arietinum L. HOM05D001228 ORTHO05D002377 1.4e-18 97.4 204 39.2
Phvul.009G179200 Phaseolus vulgaris HOM05D001228 ORTHO05D002377 1.4e-18 97.4 217 37.3
PGR044G0099 Punica granatum HOM05D001228 ORTHO05D002377 1.4e-18 97.4 221 37.6
TPR.G1678 Trifolium pratense HOM05D001228 ORTHO05D002377 1.4e-18 97.4 221 38.9
Lalb_Chr12g0201551 Lupinus albus HOM05D001228 ORTHO05D002377 3.2e-18 96.3 244 34.8
FAN08G3338 Fragaria x ananassa HOM05D001228 ORTHO05D002377 4.2e-18 95.9 238 34.9
Duzib205G0554 Durio zibethinus HOM05D001228 ORTHO05D002377 9.3e-18 94.7 246 35.8
Dinv20662 Davidia involucrata HOM05D001228 ORTHO05D002377 2.1e-17 93.6 262 33.2
Glyma.04G181900 Glycine max HOM05D001228 ORTHO05D002377 3.6e-17 92.8 214 37.4
Gohir.A12G273700 Gossypium hirsutum HOM05D001228 ORTHO05D002377 3.6e-17 92.8 236 35.2
Aa31LG11G870 Aethionema arabicum HOM05D001228 ORTHO05D002377 6.1e-17 92.0 240 36.2
Gohir.D12G274400 Gossypium hirsutum HOM05D001228 ORTHO05D002377 6.1e-17 92.0 235 34.5
Gorai.008G294900 Gossypium raimondii HOM05D001228 ORTHO05D002377 7.9e-17 91.7 235 34.5
Lalb_Chr07g0182701 Lupinus albus HOM05D001228 ORTHO05D002377 7.9e-17 91.7 244 34.8
Lalb_Chr11g0071171 Lupinus albus HOM05D001228 ORTHO05D002377 7.9e-17 91.7 220 35.5
arahy.Tifrunner.gnm1.ann1.HG7TPY Arachis hypogaea HOM05D001228 ORTHO05D002377 1.0e-16 91.3 230 37.4
VMungo1215G0222 Vigna mungo HOM05D001228 ORTHO05D002377 1.8e-16 90.5 215 35.3
arahy.Tifrunner.gnm1.ann1.LGHG7K Arachis hypogaea HOM05D001228 ORTHO05D002377 6.7e-16 88.6 230 37.0
Sp2g25970 Schrenkiella parvula HOM05D001228 ORTHO05D002377 6.7e-16 88.6 247 36.4
Phvul.003G199800 Phaseolus vulgaris HOM05D001228 ORTHO05D002377 8.7e-16 88.2 215 35.3
arahy.Tifrunner.gnm1.ann1.MBR1GC Arachis hypogaea HOM05D001228 ORTHO05D002377 1.9e-15 87.0 200 36.0
Glyma.05G037100 Glycine max HOM05D001228 ORTHO05D002377 4.3e-15 85.9 218 37.2
Glyma.17G090100 Glycine max HOM05D001228 ORTHO05D002377 5.7e-15 85.5 229 35.4
Thhalv10004696m.g Eutrema salsugineum HOM05D001228 ORTHO05D002377 1.3e-14 84.3 247 36.0
Peaxi162Scf00689g00217 Petunia axillaris HOM05D001228 ORTHO05D002377 1.6e-14 84.0 193 35.8
AT5G62820 Arabidopsis thaliana HOM05D001228 ORTHO05D002377 2.2e-14 83.6 247 35.2
Lj1g0012517 Lotus japonicus HOM05D001228 ORTHO05D002377 2.2e-14 83.6 216 37.0
Gohir.A09G171900 Gossypium hirsutum HOM05D001228 ORTHO05D002377 4.8e-14 82.4 236 33.5
CARHR276600 Cardamine hirsuta HOM05D001228 ORTHO05D002377 1.1e-13 81.3 252 34.5
Lsat_1_v5_gn_1_26960 Lactuca sativa HOM05D001228 ORTHO05D002377 1.1e-13 81.3 227 31.7
Sabra12G0057000 Salix brachista HOM05D001228 ORTHO05D002377 1.4e-13 80.9 221 33.9
Sopen06g027720 Solanum pennellii HOM05D001228 ORTHO05D002377 1.4e-13 80.9 248 31.0
AL8G39780 Arabidopsis lyrata HOM05D001228 ORTHO05D002377 1.8e-13 80.5 247 35.2
Nitab4.5_0000003g0540 Nicotiana tabacum HOM05D001228 ORTHO05D002377 4.1e-13 79.3 240 34.2
Gohir.D09G167600 Gossypium hirsutum HOM05D001228 ORTHO05D002377 6.9e-13 78.6 230 33.0
Nn4g22785 Nelumbo nucifera HOM05D001228 ORTHO05D002377 6.9e-13 78.6 232 35.3
Carub.0008s2354 Capsella rubella HOM05D001228 ORTHO05D002377 9.0e-13 78.2 250 33.2
Gorai.006G189300 Gossypium raimondii HOM05D001228 ORTHO05D002377 9.0e-13 78.2 236 33.1
A06p29580 Brassica napus HOM05D001228 ORTHO05D002377 1.5e-12 77.4 236 35.2
TPR.G37561 Trifolium pratense HOM05D001228 ORTHO05D002377 2.0e-12 77.0 227 33.0
Lj5C123T11 Lonicera japonica HOM05D001228 ORTHO05D002377 2.6e-12 76.6 233 31.3
Nitab4.5_0001017g0040 Nicotiana tabacum HOM05D001228 ORTHO05D002377 4.5e-12 75.9 255 32.5
Solyc06g071440.4 Solanum lycopersicum HOM05D001228 ORTHO05D002377 1.0e-11 74.7 246 32.5
Ca_21913_v3 Cicer arietinum L. HOM05D001228 ORTHO05D002377 1.7e-11 73.9 202 34.7
Hma1.2p1_0176F.1_g077520 Hydrangea macrophylla HOM05D001228 ORTHO05D002377 2.2e-11 73.6 215 34.0
Dinv02903 Davidia involucrata HOM05D001228 ORTHO05D002377 5.0e-11 72.4 53 67.9
SGA_v2.0_scaffold7G04126 Striga asiatica HOM05D001228 ORTHO05D002377 8.5e-11 71.6 285 30.2
Actinidia19096 Actinidia chinensis HOM05D001228 ORTHO05D002377 1.4e-10 70.9 240 30.4
EL10Ac5g10756 Beta vulgaris HOM05D001228 ORTHO05D002377 1.9e-10 70.5 268 31.0
Nn3g16878 Nelumbo nucifera HOM05D001228 ORTHO05D002377 1.9e-10 70.5 223 35.4
SalBow2G3124 Salvia bowleyana HOM05D001228 ORTHO05D002377 1.9e-10 70.5 337 26.4
HanXRQChr02g0037391 Helianthus annuus HOM05D001228 ORTHO05D002377 4.2e-10 69.3 183 32.2
SalBow5G1632 Salvia bowleyana HOM05D001228 ORTHO05D002377 9.4e-10 68.2 294 29.3
SalBow5G2380 Salvia bowleyana HOM05D001228 ORTHO05D002377 9.4e-10 68.2 294 29.3
PGSC0003DMG400024498 Solanum tuberosum HOM05D001228 ORTHO05D002377 1.2e-09 67.8 230 30.4
CsaV3_1G001550 Cucumis sativus L. HOM05D001228 ORTHO05D002377 2.7e-09 66.6 55 56.4
Migut.I00019 Erythranthe guttata HOM05D001228 ORTHO05D002377 2.7e-09 66.6 285 29.8
TAR629G0033 Trochodendron aralioides HOM05D001228 ORTHO05D002377 1.0e-08 64.7 217 32.3
Actinidia33061 Actinidia chinensis HOM05D001228 ORTHO05D002377 3.9e-08 62.8 52 57.7
PSO832G4192 Papaver somniferum HOM05D001228 ORTHO05D002377 5.1e-08 62.4 46 60.9
CSS0019449 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D002377 6.7e-08 62.0 182 31.3
CANSAT64G1579 Cannabis sativa HOM05D001228 ORTHO05D002377 6.7e-08 62.0 64 46.9
Nitab4.5_0005862g0010 Nicotiana tabacum HOM05D001228 ORTHO05D002377 8.8e-08 61.6 244 29.5
Migut.D01923 Erythranthe guttata HOM05D001228 ORTHO05D002377 1.1e-07 61.2 46 63.0
BcaB07g29852 Brassica carinata HOM05D001228 ORTHO05D002377 1.5e-07 60.8 243 29.2
Oeu016371.1 Olea europaea HOM05D001228 ORTHO05D002377 1.5e-07 60.8 46 60.9
Aa31LG5G21500 Aethionema arabicum HOM05D001228 ORTHO05D002377 2.0e-07 60.5 46 65.2
PSO063G0161 Papaver somniferum HOM05D001228 ORTHO05D002377 3.3e-07 59.7 46 56.5
RcHm_v2.0_Chr2g0171451 Rosa chinensis HOM05D001228 ORTHO05D002377 3.3e-07 59.7 60 43.3
GSVIVG01007763001 Vitis vinifera HOM05D001228 ORTHO05D002377 4.4e-07 59.3 46 58.7
C04p11770 Brassica napus HOM05D001228 ORTHO05D002377 5.7e-07 58.9 57 50.9
BolC4t22824H Brassica oleracea HOM05D001228 ORTHO05D002377 5.7e-07 58.9 57 50.9
BraA05t19904Z Brassica rapa HOM05D001228 ORTHO05D002377 5.7e-07 58.9 57 50.9
MBI10_g10243_MAGBIO Magnolia biondii HOM05D001228 ORTHO05D002377 5.7e-07 58.9 48 60.4
Sopen03g033390 Solanum pennellii HOM05D001228 ORTHO05D002377 5.7e-07 58.9 242 29.8
AT2G36330 Arabidopsis thaliana HOM05D001228 ORTHO05D002377 7.4e-07 58.5 48 60.4
BcaB02g09695 Brassica carinata HOM05D001228 ORTHO05D002377 7.4e-07 58.5 238 29.0
CiPaw.03G038000 Carya illinoinensis HOM05D001228 ORTHO05D002377 7.4e-07 58.5 49 53.1
Solyc03g114290.4 Solanum lycopersicum HOM05D001228 ORTHO05D002377 7.4e-07 58.5 242 29.8
Aqoxy3G02962 Aquilegia oxysepala HOM05D001228 ORTHO05D002377 9.7e-07 58.2 46 56.5
Solyc02g086860.4 Solanum lycopersicum HOM05D001228 ORTHO05D002377 9.7e-07 58.2 185 31.9
unitig_744.g24401 Utricularia gibba HOM05D001228 ORTHO05D002377 9.7e-07 58.2 204 33.3
MSTRG.11445 Avicennia marina HOM05D001228 ORTHO05D002377 1.3e-06 57.8 46 60.9
BraA06t25904Z Brassica rapa HOM05D001228 ORTHO05D002377 1.3e-06 57.8 239 31.4
Thhalv10017222m.g Eutrema salsugineum HOM05D001228 ORTHO05D002377 1.3e-06 57.8 48 58.3
Dinv35061 Davidia involucrata HOM05D001228 ORTHO05D002377 1.7e-06 57.4 172 30.8
Oeu024761.1 Olea europaea HOM05D001228 ORTHO05D002377 1.7e-06 57.4 46 56.5
A05p09520 Brassica napus HOM05D001228 ORTHO05D002377 2.2e-06 57.0 55 54.5
MD09G1034100 Malus domestica HOM05D001228 ORTHO05D002377 2.2e-06 57.0 49 49.0
Sopen02g031630 Solanum pennellii HOM05D001228 ORTHO05D002377 2.2e-06 57.0 191 32.5
A02p42490 Brassica napus HOM05D001228 ORTHO05D002377 2.8e-06 56.6 241 30.3
C02p62420 Brassica napus HOM05D001228 ORTHO05D002377 2.8e-06 56.6 241 30.3
BraA02t09177Z Brassica rapa HOM05D001228 ORTHO05D002377 2.8e-06 56.6 241 30.3
HanXRQChr10g0295771 Helianthus annuus HOM05D001228 ORTHO05D002377 2.8e-06 56.6 230 27.4
Lsat_1_v5_gn_5_17320 Lactuca sativa HOM05D001228 ORTHO05D002377 2.8e-06 56.6 237 29.1
Sp4g18580 Schrenkiella parvula HOM05D001228 ORTHO05D002377 2.8e-06 56.6 46 58.7
PGSC0003DMG403000524 Solanum tuberosum HOM05D001228 ORTHO05D002377 2.8e-06 56.6 201 29.9
TAR374G0262 Trochodendron aralioides HOM05D001228 ORTHO05D002377 2.8e-06 56.6 46 58.7
C03p63920 Brassica napus HOM05D001228 ORTHO05D002377 3.7e-06 56.2 239 30.5
BcaC01g02524 Brassica carinata HOM05D001228 ORTHO05D002377 4.8e-06 55.8 240 30.4
BolC3t18646H Brassica oleracea HOM05D001228 ORTHO05D002377 4.8e-06 55.8 240 30.4
CARHR130620 Cardamine hirsuta HOM05D001228 ORTHO05D002377 4.8e-06 55.8 46 58.7
arahy.Tifrunner.gnm1.ann1.9MW0DX Arachis hypogaea HOM05D001228 ORTHO05D002377 6.3e-06 55.5 179 31.8
Carub.0004s1811 Capsella rubella HOM05D001228 ORTHO05D002377 6.3e-06 55.5 46 58.7
MSTRG.3170 Avicennia marina HOM05D001228 ORTHO05D002377 8.2e-06 55.1 51 52.9
ECA246G2365 Erigeron canadensis HOM05D001228 ORTHO05D002377 8.2e-06 55.1 194 28.9
Phvul.004G014400 Phaseolus vulgaris HOM05D001228 ORTHO05D002377 8.2e-06 55.1 74 43.2
vmacro19378 Vaccinium macrocarpon HOM05D001228 ORTHO05D002377 8.2e-06 55.1 67 46.3


User provided reference genes

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