Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 2.6e-161 572.0 288 100.0
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 2.2e-136 489.2 288 86.1
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 7.3e-116 421.0 277 76.5
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 2.8e-115 419.1 288 73.3
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 3.6e-115 418.7 285 74.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 8.1e-115 417.5 289 74.4
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.5e-113 413.3 285 74.7
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 2.6e-113 412.5 288 71.2
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 8.4e-112 407.5 274 74.8
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.9e-111 406.4 277 74.4
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 3.2e-111 405.6 270 76.3
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 7.1e-111 404.4 277 71.8
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.1e-111 404.4 277 71.8
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 4.6e-110 401.7 282 69.9
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.0e-109 400.6 281 68.7
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.3e-109 400.2 277 71.8
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 2.3e-109 399.4 282 68.8
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.9e-109 398.7 274 72.3
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 5.1e-109 398.3 275 71.3
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 8.7e-109 397.5 276 71.7
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 1.9e-108 396.4 292 70.5
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 2.5e-108 396.0 291 69.8
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 7.3e-108 394.4 276 71.0
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 4.8e-107 391.7 288 67.4
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 4.8e-107 391.7 276 71.4
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 1.4e-106 390.2 281 68.3
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 2.0e-105 386.3 283 68.6
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 5.8e-105 384.8 283 68.6
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 9.9e-105 384.0 280 68.6
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 9.9e-105 384.0 279 66.3
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.3e-104 383.6 272 69.9
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 1.3e-104 383.6 291 66.7
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 1.3e-104 383.6 275 70.5
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 2.9e-104 382.5 286 67.5
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 3.8e-104 382.1 275 67.3
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 4.9e-104 381.7 282 66.7
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 4.9e-104 381.7 283 67.8
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 6.4e-104 381.3 284 64.4
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 6.4e-104 381.3 275 70.2
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.1e-103 380.6 290 66.6
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 2.4e-103 379.4 281 67.6
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 4.2e-103 378.6 270 70.4
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 4.2e-103 378.6 285 67.4
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.1e-102 376.3 275 69.5
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 3.5e-102 375.6 270 70.0
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 4.6e-102 375.2 287 69.0
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 7.9e-102 374.4 296 65.2
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.0e-101 374.0 293 65.9
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 1.0e-101 374.0 285 66.7
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 3.0e-101 372.5 286 66.8
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 8.7e-101 370.9 282 65.2
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-100 370.5 287 64.1
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.9e-100 369.8 285 66.3
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 4.3e-100 368.6 264 70.5
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 4.3e-100 368.6 274 64.2
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 2.8e-99 365.9 274 64.6
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 2.8e-99 365.9 286 62.6
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 3.6e-99 365.5 285 66.0
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 4.8e-99 365.2 272 67.3
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 2.4e-98 362.8 270 65.2
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.5e-97 360.1 298 63.4
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 3.4e-97 359.0 279 65.2
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.7e-96 356.7 255 67.1
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.9e-96 355.9 283 61.1
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.1e-95 354.0 271 64.9
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.1e-95 354.0 271 64.9
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 1.2e-94 350.5 249 67.9
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 2.1e-94 349.7 249 67.5
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.7e-94 349.4 315 57.8
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 6.0e-94 348.2 315 57.1
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 1.3e-93 347.1 249 67.1
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 1.3e-93 347.1 265 68.3
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 1.8e-93 346.7 275 65.8
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 9.6e-92 340.9 340 55.0
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 1.1e-90 337.4 209 77.5
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 2.9e-88 329.3 249 65.5
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 3.2e-87 325.9 210 75.2
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 3.5e-86 322.4 209 71.3
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.0e-85 320.9 245 69.0
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 8.7e-85 317.8 286 57.3
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 1.3e-83 313.9 283 60.8
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 1.3e-80 303.9 197 71.6
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 3.8e-80 302.4 247 60.3
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.6e-78 297.0 230 62.2
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.8e-77 293.5 229 65.5
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 5.1e-77 292.0 289 56.7
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.8e-74 283.5 275 53.1
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 5.9e-73 278.5 239 57.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.3e-69 266.5 236 55.1
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 5.7e-68 261.9 192 68.2
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 7.4e-68 261.5 225 57.8
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 2.0e-65 253.4 215 63.7
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.3e-64 250.8 223 60.5
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 6.5e-64 248.4 183 69.4
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 2.1e-62 243.4 173 72.3
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 6.3e-59 231.9 181 67.4
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 8.5e-56 221.5 223 52.9
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.2e-55 219.2 161 69.6
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.3e-51 207.6 133 75.2
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 4.2e-47 192.6 182 54.9
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 1.2e-44 184.5 172 54.7
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.3e-43 181.0 237 46.0
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 1.4e-42 177.6 305 37.4
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.0e-40 171.4 140 60.7
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 6.5e-40 168.7 102 75.5
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 5.5e-39 165.6 100 80.0
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 9.8e-36 154.8 179 47.5
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.4e-34 151.0 138 58.7
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 7.3e-31 138.7 106 61.3
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 1.4e-29 134.4 104 65.4
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-29 134.0 104 58.7
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 1.1e-26 124.8 100 62.0
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-26 124.0 97 57.7
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 4.1e-26 122.9 83 69.9
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 1.2e-22 111.3 102 53.9
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.5e-20 104.4 233 32.6
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 3.4e-20 103.2 125 50.4
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 1.4e-18 97.8 119 48.7
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 3.3e-15 86.7 123 43.9
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-15 86.7 97 49.5
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 6.8e-13 79.0 65 56.9
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.5e-12 77.8 67 55.2
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.5e-12 77.8 54 68.5
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.0e-12 77.4 50 74.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 7.5e-12 75.5 65 60.0


User provided reference genes

Program Settings