Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 3.9e-191 671.4 357 100.0
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 6.4e-178 627.5 357 91.6
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 9.3e-129 464.2 362 71.0
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.3e-106 390.6 369 61.8
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 1.5e-102 377.1 294 73.5
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.4e-100 369.8 377 62.1
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 5.3e-100 368.6 363 61.7
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 3.5e-99 365.9 363 60.3
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.3e-98 364.0 377 58.1
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.3e-98 364.0 363 60.1
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 3.8e-98 362.5 367 57.8
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 3.8e-98 362.5 367 59.4
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.5e-97 360.5 363 62.3
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 4.2e-97 359.0 371 59.0
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 9.4e-97 357.8 363 59.0
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.6e-96 357.1 364 58.5
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.1e-96 356.7 363 57.6
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.7e-96 356.3 359 58.2
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.3e-95 353.2 359 57.7
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.5e-94 350.5 363 58.4
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.3e-93 347.4 379 57.3
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 9.1e-92 341.3 385 58.2
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-91 340.9 363 57.3
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.0e-91 340.1 364 59.9
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 3.5e-91 339.3 370 55.7
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 3.8e-90 335.9 370 57.0
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 6.5e-90 335.1 385 55.8
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 2.5e-89 333.2 391 51.4
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 4.2e-89 332.4 386 56.0
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 3.0e-87 326.2 359 54.9
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 6.8e-87 325.1 370 51.9
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 1.5e-86 323.9 370 56.2
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 3.7e-85 319.3 359 55.7
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 3.1e-84 316.2 373 54.7
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 1.3e-82 310.8 360 51.9
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 1.3e-82 310.8 363 52.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.9e-82 309.7 371 52.6
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 2.5e-81 306.6 364 54.1
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 4.3e-81 305.8 375 52.8
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.2e-80 304.3 367 53.4
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.3e-79 300.1 358 54.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 6.8e-79 298.5 432 47.0
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 6.8e-79 298.5 371 53.1
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.2e-78 297.7 358 54.5
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 1.5e-78 297.4 369 54.2
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 3.4e-78 296.2 374 51.3
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 3.4e-78 296.2 375 54.7
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.4e-78 296.2 359 53.8
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.1e-76 291.2 404 47.0
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.6e-75 287.3 356 54.5
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 5.0e-74 282.3 354 54.8
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 1.6e-72 277.3 357 49.3
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 6.8e-71 271.9 352 48.9
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 8.9e-71 271.6 459 44.9
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 8.9e-71 271.6 301 56.8
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 9.8e-70 268.1 357 51.8
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.9e-69 266.5 359 49.6
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 1.9e-68 263.8 313 55.0
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.6e-67 260.8 376 47.3
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 4.6e-67 259.2 365 46.6
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 5.0e-66 255.8 360 50.0
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.5e-65 254.2 383 46.7
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 2.5e-65 253.4 358 47.5
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 3.3e-65 253.1 357 49.0
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 5.6e-65 252.3 358 46.6
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 2.3e-63 246.9 296 53.4
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 3.2e-60 236.5 380 43.4
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 9.2e-60 235.0 397 43.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.6e-59 234.2 425 44.5
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.6e-57 225.7 365 45.8
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.1e-55 221.5 372 44.1
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 6.8e-55 218.8 372 45.2
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 8.9e-55 218.4 378 43.4
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 9.9e-54 214.9 370 43.2
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 9.9e-54 214.9 370 43.2
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 4.9e-53 212.6 372 42.2
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 6.4e-53 212.2 374 43.0
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.6e-51 207.6 403 40.0
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 2.7e-51 206.8 406 41.1
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 6.6e-50 202.2 371 43.1
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.1e-49 201.4 372 41.4
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.1e-49 201.4 372 41.4
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 4.3e-49 199.5 296 45.9
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 9.6e-49 198.4 355 41.4
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.6e-48 197.6 375 39.2
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 2.8e-48 196.8 364 40.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.2e-48 195.7 360 39.7
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.8e-47 194.1 341 40.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 8.4e-45 185.3 377 40.1
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 4.2e-44 183.0 297 44.8
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 9.3e-44 181.8 190 59.5
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.5e-41 174.5 305 42.3
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 8.4e-37 158.7 385 36.6
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.7e-35 153.7 377 37.4
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 3.5e-35 153.3 360 35.6
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 7.9e-35 152.1 360 35.6
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.8e-34 151.0 302 40.1
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 3.9e-34 149.8 365 38.9
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.2e-32 142.5 292 37.0
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 3.1e-31 140.2 340 36.8
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 1.5e-30 137.9 365 34.2
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 4.5e-30 136.3 359 35.4
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 5.8e-30 136.0 359 34.5
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 3.2e-28 130.2 375 32.8
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.8e-18 97.8 108 48.1
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-15 86.7 51 78.4
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-15 86.7 51 78.4
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 5.3e-15 86.3 64 65.6
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-14 85.1 51 76.5
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.6e-14 84.0 51 74.5
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-13 82.0 51 76.5
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-13 82.0 51 74.5
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-13 82.0 51 74.5
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.0e-13 82.0 47 80.9
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.2e-13 80.9 51 76.5
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.5e-13 79.3 51 70.6
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 3.2e-12 77.0 165 38.2
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.6e-11 74.7 51 68.6
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 3.9e-10 70.1 207 31.9
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 3.3e-09 67.0 51 62.7
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 5.7e-09 66.2 86 40.7
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 1.1e-07 62.0 209 28.7
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 1.2e-06 58.5 65 53.8
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.0e-06 57.8 41 61.0


User provided reference genes

Program Settings