Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 5.7e-245 850.5 436 100.0
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 4.8e-212 741.1 393 95.7
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 4.3e-176 621.7 392 79.6
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.8e-175 619.0 376 83.5
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 2.6e-173 612.5 392 77.6
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.3e-153 547.0 393 68.2
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 9.6e-152 540.8 393 68.2
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 2.1e-151 539.7 389 67.4
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.9e-150 534.6 394 67.8
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.0e-149 533.1 394 67.5
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 3.4e-149 532.3 389 66.1
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 1.3e-148 530.4 393 66.4
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.4e-148 528.1 394 66.8
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.4e-148 528.1 394 66.8
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 9.3e-147 524.2 394 66.8
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 6.0e-146 521.5 417 62.8
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 7.9e-146 521.2 391 65.7
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 7.9e-146 521.2 391 65.5
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 6.7e-145 518.1 391 65.2
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.5e-144 516.9 403 64.5
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.5e-144 516.9 389 65.6
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.9e-144 516.5 390 64.6
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.5e-144 516.2 387 66.9
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 6.2e-143 511.5 396 63.4
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 6.9e-142 508.1 394 64.5
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.4e-141 505.8 392 64.8
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 4.9e-140 501.9 392 64.3
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 3.2e-139 499.2 392 63.0
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 3.2e-139 499.2 392 63.8
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 3.2e-139 499.2 391 62.4
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.2e-138 497.3 392 62.8
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 4.6e-138 495.4 394 63.2
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 3.0e-137 492.7 390 61.5
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 5.1e-137 491.9 393 61.3
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 2.5e-136 489.6 392 62.5
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 2.5e-136 489.6 414 58.5
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 5.7e-136 488.4 391 62.9
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 1.3e-135 487.3 389 61.4
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 2.1e-135 486.5 398 60.6
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.8e-135 486.1 393 61.3
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 4.8e-135 485.3 391 62.4
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.1e-134 484.2 391 61.1
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 5.3e-134 481.9 393 60.6
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 6.9e-134 481.5 395 60.8
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.2e-133 480.7 392 61.2
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.6e-133 479.6 392 59.7
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.9e-132 476.1 373 62.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 1.9e-131 473.4 391 59.8
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 4.6e-130 468.8 392 59.7
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 4.6e-130 468.8 392 59.4
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 6.1e-130 468.4 391 59.8
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 7.9e-130 468.0 392 59.4
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.0e-129 467.6 391 58.8
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-129 466.8 392 59.2
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 5.1e-129 465.3 393 59.5
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 2.2e-127 459.9 353 65.4
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 3.1e-126 456.1 388 57.7
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.1e-123 447.6 391 59.1
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 2.5e-123 446.4 391 58.8
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 2.1e-122 443.4 395 58.0
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 3.6e-122 442.6 394 58.4
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 6.1e-122 441.8 389 58.6
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 6.7e-121 438.3 392 54.1
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 8.8e-121 438.0 392 57.4
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.1e-120 437.6 392 56.1
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.5e-120 437.2 395 57.2
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 3.3e-120 436.0 411 55.2
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 2.4e-118 429.9 390 55.6
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 9.1e-118 427.9 418 54.8
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 1.5e-117 427.2 390 55.9
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.5e-117 427.2 390 54.9
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.5e-117 425.6 389 54.8
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 8.5e-116 421.4 417 52.5
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 8.5e-116 421.4 417 52.5
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.1e-115 421.0 391 52.7
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.6e-114 417.2 389 52.2
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 2.1e-114 416.8 417 51.8
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 2.7e-114 416.4 389 52.4
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.7e-114 415.6 389 53.5
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.1e-112 411.0 393 52.7
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 3.3e-112 409.5 392 52.3
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 2.8e-111 406.4 412 51.7
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.4e-110 404.1 395 53.9
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.8e-110 403.7 419 52.5
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.5e-109 400.6 393 52.4
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 2.0e-109 400.2 393 52.7
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 9.4e-107 391.3 391 52.2
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 2.7e-106 389.8 392 52.3
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 8.0e-106 388.3 392 50.0
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 8.2e-103 378.3 314 61.5
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 1.4e-102 377.5 397 49.4
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 1.4e-102 377.5 347 57.6
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.6e-101 374.0 394 48.2
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 2.0e-101 373.6 386 50.8
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 4.5e-101 372.5 392 49.0
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 5.0e-100 369.0 392 48.7
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.1e-99 367.9 397 48.1
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 2.5e-99 366.7 388 50.3
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 4.2e-99 365.9 400 47.2
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 1.2e-98 364.4 398 48.5
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.0e-97 361.3 400 47.2
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 9.8e-96 354.8 263 65.0
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.4e-94 350.1 393 46.6
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 5.9e-93 345.5 393 47.8
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.7e-92 344.0 393 46.6
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 2.2e-92 343.6 395 46.6
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 6.5e-92 342.0 393 46.1
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 2.7e-90 336.7 374 47.1
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 5.7e-88 328.9 333 50.8
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.4e-86 322.4 272 58.5
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 9.2e-70 268.5 294 47.6
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.0e-68 265.0 420 39.8
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 9.8e-64 248.4 179 69.8
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 2.7e-45 187.2 311 39.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 6.0e-45 186.0 261 37.9
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 1.5e-40 171.4 370 32.2
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 9.9e-40 168.7 229 43.7
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 2.9e-39 167.2 393 29.5
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 2.1e-34 151.0 398 28.9
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 4.2e-30 136.7 440 28.9
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.0e-28 132.1 312 32.7
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 7.4e-27 125.9 180 43.9
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-26 125.2 397 26.4
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-26 125.2 397 26.4
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.5e-24 118.2 179 41.9
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 1.9e-22 111.3 351 25.4
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 4.2e-22 110.2 345 27.2
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 6.0e-21 106.3 104 50.0
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.9e-14 84.7 282 25.2
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 7.4e-11 72.8 62 51.6
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 2.4e-09 67.8 276 26.1
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 1.0e-07 62.4 47 61.7


User provided reference genes

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