Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07323 Corylus avellana HOM05D001516 ORTHO05D001357 1.4e-134 483.0 248 100.0
Cfa018939 Carpinus fangiana HOM05D001516 ORTHO05D001357 1.5e-101 373.2 270 74.4
QL10p017048 Quercus lobata HOM05D001516 ORTHO05D001357 4.6e-42 175.6 271 44.3
Dinv19967 Davidia involucrata HOM05D001516 ORTHO05D001357 5.3e-30 135.6 312 33.7
CiPaw.11G044900 Carya illinoinensis HOM05D001516 ORTHO05D001357 3.4e-29 132.9 261 37.9
Thecc.03G088400 Theobroma cacao HOM05D001516 ORTHO05D001357 3.8e-28 129.4 301 35.5
Dinv38715 Davidia involucrata HOM05D001516 ORTHO05D001357 7.1e-27 125.2 334 33.5
TAR622G1447 Trochodendron aralioides HOM05D001516 ORTHO05D001357 1.1e-24 117.9 246 34.1
CiPaw.12G013100 Carya illinoinensis HOM05D001516 ORTHO05D001357 1.4e-22 110.9 248 37.9
GSVIVG01007998001 Vitis vinifera HOM05D001516 ORTHO05D001357 1.9e-19 100.5 247 33.2
Nitab4.5_0001128g0160 Nicotiana tabacum HOM05D001516 ORTHO05D001357 2.1e-18 97.1 292 30.5
Glyma.17G100400 Glycine max HOM05D001516 ORTHO05D001357 3.6e-18 96.3 280 33.6
Gohir.A12G177800 Gossypium hirsutum HOM05D001516 ORTHO05D001357 6.1e-18 95.5 304 30.9
Gorai.008G193400 Gossypium raimondii HOM05D001516 ORTHO05D001357 7.9e-18 95.1 307 31.3
RcHm_v2.0_Chr7g0181471 Rosa chinensis HOM05D001516 ORTHO05D001357 7.9e-18 95.1 109 55.0
vmacro17540 Vaccinium macrocarpon HOM05D001516 ORTHO05D001357 7.9e-18 95.1 300 29.3
Gohir.D12G180200 Gossypium hirsutum HOM05D001516 ORTHO05D001357 1.8e-17 94.0 307 31.3
Manes.14G078300 Manihot esculenta HOM05D001516 ORTHO05D001357 1.8e-17 94.0 308 32.5
Hma1.2p1_1936F.1_g308190 Hydrangea macrophylla HOM05D001516 ORTHO05D001357 3.9e-17 92.8 108 55.6
Hma1.2p1_2516F.1_g323670 Hydrangea macrophylla HOM05D001516 ORTHO05D001357 3.9e-17 92.8 108 55.6
Hma1.2p1_2516F.1_g323675 Hydrangea macrophylla HOM05D001516 ORTHO05D001357 3.9e-17 92.8 108 55.6
Oeu002100.1 Olea europaea HOM05D001516 ORTHO05D001357 3.9e-17 92.8 315 30.5
FvH4_5g14910 Fragaria vesca HOM05D001516 ORTHO05D001357 6.7e-17 92.0 109 53.2
FAN18G1478 Fragaria x ananassa HOM05D001516 ORTHO05D001357 6.7e-17 92.0 109 53.2
Duzib205G1743 Durio zibethinus HOM05D001516 ORTHO05D001357 8.8e-17 91.7 276 31.9
Prupe.5G193900 Prunus persica HOM05D001516 ORTHO05D001357 1.5e-16 90.9 105 50.5
CAN.G837.21 Capsicum annuum HOM05D001516 ORTHO05D001357 2.0e-16 90.5 285 29.8
FAN08G1806 Fragaria x ananassa HOM05D001516 ORTHO05D001357 4.3e-16 89.4 109 50.5
Glyma.05G026500 Glycine max HOM05D001516 ORTHO05D001357 4.3e-16 89.4 301 30.2
Oeu047294.1 Olea europaea HOM05D001516 ORTHO05D001357 4.3e-16 89.4 242 33.5
FAN04G2572 Fragaria x ananassa HOM05D001516 ORTHO05D001357 9.7e-16 88.2 109 50.5
FAN13G2484 Fragaria x ananassa HOM05D001516 ORTHO05D001357 9.7e-16 88.2 109 50.5
AUR62008420 Chenopodium quinoa HOM05D003700 ORTHO05D004160 3.7e-15 86.3 227 32.2
SHI07720 Sapria himalayana HOM05D001516 ORTHO05D001357 3.7e-15 86.3 110 54.5
ClCG06G016200 Citrullus lanatus HOM05D000001 ORTHO05D009806 8.2e-15 85.1 235 30.6
MD06G1193600 Malus domestica HOM05D001516 ORTHO05D001357 8.2e-15 85.1 107 48.6
Solyc03g116010.3 Solanum lycopersicum HOM05D001516 ORTHO05D001357 3.1e-14 83.2 95 51.6
Sopen03g035000 Solanum pennellii HOM05D001516 ORTHO05D001357 4.1e-14 82.8 95 53.7
TWI81G1013 Tripterygium wilfordii HOM05D001516 ORTHO05D001357 1.2e-13 81.3 103 53.4
arahy.Tifrunner.gnm1.ann1.BD7JB4 Arachis hypogaea HOM05D001516 ORTHO05D001357 1.5e-13 80.9 131 43.5
Peaxi162Scf00274g00057 Petunia axillaris HOM05D001516 ORTHO05D001357 1.5e-13 80.9 319 30.1
arahy.Tifrunner.gnm1.ann1.DD2ABE Arachis hypogaea HOM05D001516 ORTHO05D001357 3.4e-13 79.7 75 57.3
arahy.Tifrunner.gnm1.ann1.WBWR58 Arachis hypogaea HOM05D001516 ORTHO05D001357 1.0e-12 78.2 86 53.5
Lalb_Chr13g0303231 Lupinus albus HOM05D001516 ORTHO05D001357 1.3e-12 77.8 83 57.8
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 1.7e-12 77.4 75 60.0
Ca_21821_v3 Cicer arietinum L. HOM05D001516 ORTHO05D001357 1.7e-12 77.4 227 32.6
Cc04_g16590 Coffea canephora HOM05D001516 ORTHO05D001357 2.2e-12 77.0 306 28.4
Aa31LG3G11140 Aethionema arabicum HOM05D001516 ORTHO05D001357 5.0e-12 75.9 56 69.6
arahy.Tifrunner.gnm1.ann1.632XZS Arachis hypogaea HOM05D001516 ORTHO05D001357 5.0e-12 75.9 86 53.5
Migut.D01815 Erythranthe guttata HOM05D001516 ORTHO05D001357 6.5e-12 75.5 89 49.4
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 1.1e-11 74.7 75 58.7
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 1.1e-11 74.7 75 58.7
BolC9t54021H Brassica oleracea HOM05D001516 ORTHO05D001357 1.1e-11 74.7 75 58.7
Actinidia04889 Actinidia chinensis HOM05D001516 ORTHO05D001357 3.2e-11 73.2 113 49.6
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 3.2e-11 73.2 71 60.6
Carub.0002s2128 Capsella rubella HOM05D001516 ORTHO05D001357 4.2e-11 72.8 105 50.5
Lj1g0018954 Lotus japonicus HOM05D001516 ORTHO05D001357 4.2e-11 72.8 79 57.0
Nn4g23180 Nelumbo nucifera HOM05D001516 ORTHO05D001357 5.5e-11 72.4 74 55.4
Sp5g29660 Schrenkiella parvula HOM05D001516 ORTHO05D001357 5.5e-11 72.4 108 45.4
AL2G34360 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 7.2e-11 72.0 110 47.3
CARHR280690 Cardamine hirsuta HOM05D001516 ORTHO05D001357 7.2e-11 72.0 65 58.5
Lj5A110G125 Lonicera japonica HOM05D001516 ORTHO05D001357 7.2e-11 72.0 127 42.5
Rhsim08G0154700 Rhododendron simsii HOM05D001516 ORTHO05D001357 9.4e-11 71.6 90 50.0
Thhalv10005560m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 1.2e-10 71.2 77 55.8
VMungo1215G0517 Vigna mungo HOM05D001516 ORTHO05D001357 1.2e-10 71.2 95 51.6
AT1G74480 Arabidopsis thaliana HOM05D001516 ORTHO05D001357 1.6e-10 70.9 110 46.4
AT5G66990 Arabidopsis thaliana HOM05D001516 ORTHO05D001357 1.6e-10 70.9 60 61.7
Ca_05457_v3 Cicer arietinum L. HOM05D001516 ORTHO05D001357 1.6e-10 70.9 46 78.3
Psat5g182200 Pisum sativum HOM05D001516 ORTHO05D001357 1.6e-10 70.9 62 61.3
Sp2g29670 Schrenkiella parvula HOM05D001516 ORTHO05D001357 1.6e-10 70.9 65 58.5
Glyma.04G169000 Glycine max HOM05D001516 ORTHO05D001357 2.1e-10 70.5 57 61.4
Phvul.003G189900 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 2.1e-10 70.5 73 57.5
Cpa.g.sc423.7 Carica papaya HOM05D001516 ORTHO05D001357 2.7e-10 70.1 56 64.3
ECA246G3832 Erigeron canadensis HOM05D001516 ORTHO05D001357 2.7e-10 70.1 117 40.2
TPR.G11841 Trifolium pratense HOM05D001516 ORTHO05D001357 2.7e-10 70.1 62 58.1
AL1031U10020 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 3.6e-10 69.7 60 60.0
AL2G23160 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 3.6e-10 69.7 60 60.0
AL8G44380 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 3.6e-10 69.7 60 60.0
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 3.6e-10 69.7 66 57.6
Lalb_Chr07g0178071 Lupinus albus HOM05D001516 ORTHO05D001357 3.6e-10 69.7 78 55.1
unitig_0.g2521 Utricularia gibba HOM05D001516 ORTHO05D001357 3.6e-10 69.7 94 44.7
HanXRQChr05g0155981 Helianthus annuus HOM05D001516 ORTHO05D001357 4.7e-10 69.3 58 60.3
Lj4g0012567 Lotus japonicus HOM05D001516 ORTHO05D001357 7.9e-10 68.6 77 51.9
SalBow5G5133 Salvia bowleyana HOM05D001516 ORTHO05D001357 7.9e-10 68.6 69 56.5
THA.LOC104821259 Tarenaya hassleriana HOM05D001516 ORTHO05D001357 7.9e-10 68.6 72 52.8
VMungo1309G2066 Vigna mungo HOM05D001516 ORTHO05D001357 7.9e-10 68.6 46 71.7
Aqoxy2G03603 Aquilegia oxysepala HOM05D001516 ORTHO05D001357 1.0e-09 68.2 257 28.4
Lj9A464G81 Lonicera japonica HOM05D001516 ORTHO05D001357 1.0e-09 68.2 106 48.1
CARHR128300 Cardamine hirsuta HOM05D001516 ORTHO05D001357 1.4e-09 67.8 118 39.0
Thhalv10019554m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 1.4e-09 67.8 114 43.9
Oeu025701.1 Olea europaea HOM05D001516 ORTHO05D001357 1.4e-09 67.8 71 53.5
Aa31LG4G4740 Aethionema arabicum HOM05D001516 ORTHO05D001357 1.8e-09 67.4 87 50.6
Medtr3g435550 Medicago truncatula HOM05D001516 ORTHO05D001357 1.8e-09 67.4 62 62.9
Phvul.009G186900 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 1.8e-09 67.4 77 51.9
CARHR067760 Cardamine hirsuta HOM05D001516 ORTHO05D001357 2.3e-09 67.0 107 44.9
HanXRQChr09g0270851 Helianthus annuus HOM05D001516 ORTHO05D001357 2.3e-09 67.0 107 44.9
Oeu015920.1 Olea europaea HOM05D001516 ORTHO05D001357 2.3e-09 67.0 71 53.5
MELO3C017174.2 Cucumis melo HOM05D001516 ORTHO05D001357 3.0e-09 66.6 71 57.7
BcaC06g34775 Brassica carinata HOM05D001516 ORTHO05D001357 3.9e-09 66.2 67 55.2
C07p24760 Brassica napus HOM05D001516 ORTHO05D001357 3.9e-09 66.2 67 55.2
BolC7t42997H Brassica oleracea HOM05D001516 ORTHO05D001357 3.9e-09 66.2 67 55.2
ECA232G4475 Erigeron canadensis HOM05D000623 ORTHO05D001357 3.9e-09 66.2 121 43.0
unitig_26.g9647 Utricularia gibba HOM05D001516 ORTHO05D001357 3.9e-09 66.2 89 44.9
EL10Ac5g11022 Beta vulgaris HOM05D001516 ORTHO05D001357 5.1e-09 65.9 52 65.4
PGR044G0184 Punica granatum HOM05D001516 ORTHO05D001357 5.1e-09 65.9 65 56.9
Sed0021767 Sechium edule HOM05D001516 ORTHO05D001357 5.1e-09 65.9 90 52.2
Ah.02g113540 Amaranthus hybridus HOM05D001516 ORTHO05D001357 6.7e-09 65.5 59 62.7
AUR62021674 Chenopodium quinoa HOM05D000001 ORTHO05D009806 6.7e-09 65.5 59 61.0
PSO832G0026 Papaver somniferum HOM05D001516 ORTHO05D001357 6.7e-09 65.5 62 58.1
Sed0004547 Sechium edule HOM05D001516 ORTHO05D001357 6.7e-09 65.5 61 59.0
Carub.0008s2751 Capsella rubella HOM05D001516 ORTHO05D001357 8.8e-09 65.1 54 61.1
Sc04g0002670 Simmondsia chinensis HOM05D001516 ORTHO05D001357 8.8e-09 65.1 61 57.4
Aqoxy3G03392 Aquilegia oxysepala HOM05D001516 ORTHO05D001357 1.5e-08 64.3 71 45.1
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 1.5e-08 64.3 62 54.8
MBI05_g29538_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009806 2.6e-08 63.5 71 43.7
Actinidia34999 Actinidia chinensis HOM05D000618 ORTHO05D000454 3.3e-08 63.2 93 38.7
Aa31LG1G15540 Aethionema arabicum HOM05D001516 ORTHO05D001357 3.3e-08 63.2 62 54.8
DCAR_016564 Daucus carota HOM05D001516 ORTHO05D001357 3.3e-08 63.2 71 56.3
Lsat_1_v5_gn_5_19641 Lactuca sativa HOM05D001516 ORTHO05D001357 3.3e-08 63.2 114 43.9
Manes.06G092001 Manihot esculenta HOM05D001516 ORTHO05D001357 3.3e-08 63.2 111 44.1
Psat4g050920 Pisum sativum HOM05D001516 ORTHO05D001357 3.3e-08 63.2 64 59.4
AL1G31300 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 4.4e-08 62.8 74 52.7
Os06g0228950 Oryza sativa ssp. japonica HOM05D001516 ORTHO05D001357 4.4e-08 62.8 48 60.4
TPR.G9267 Trifolium pratense HOM05D001516 ORTHO05D001357 4.4e-08 62.8 65 53.8
AT1G18790 Arabidopsis thaliana HOM05D001516 ORTHO05D001357 5.7e-08 62.4 73 53.4
Migut.I00182 Erythranthe guttata HOM05D001516 ORTHO05D001357 5.7e-08 62.4 118 43.2
Zm00001eb372360 Zea mays HOM05D001516 ORTHO05D001357 9.7e-08 61.6 46 63.0
Thhalv10009845m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 1.7e-07 60.8 61 52.5
Dinv29267 Davidia involucrata HOM05D001516 ORTHO05D001357 2.8e-07 60.1 43 65.1
PGR083G1206 Punica granatum HOM05D001516 ORTHO05D001357 2.8e-07 60.1 71 50.7
ATR0602G211 Amborella trichopoda HOM05D001516 ORTHO05D001357 3.7e-07 59.7 67 46.3
ATR0706G008 Amborella trichopoda HOM05D001516 ORTHO05D001357 3.7e-07 59.7 67 44.8
COL.COLO4_16774 Corchorus olitorius HOM05D001516 ORTHO05D001357 3.7e-07 59.7 41 68.3
Carub.0001s1843 Capsella rubella HOM05D001516 ORTHO05D001357 4.8e-07 59.3 86 47.7
SEGI_29663 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 4.8e-07 59.3 70 45.7
SGA_v2.0_scaffold55G19777 Striga asiatica HOM05D001516 ORTHO05D001357 4.8e-07 59.3 41 68.3
SGA_v2.0_scaffold14G07083 Striga asiatica HOM05D000126 ORTHO05D001357 6.3e-07 58.9 58 56.9
Lj1A1018G73 Lonicera japonica HOM05D001516 ORTHO05D001357 8.2e-07 58.5 42 64.3
Lj1C1021G15 Lonicera japonica HOM05D001516 ORTHO05D001357 8.2e-07 58.5 56 51.8
Potri.012G016800 Populus trichocarpa HOM05D001516 ORTHO05D001357 8.2e-07 58.5 40 67.5
Sp1g16770 Schrenkiella parvula HOM05D001516 ORTHO05D001357 8.2e-07 58.5 62 51.6
Gohir.A03G051800 Gossypium hirsutum HOM05D001516 ORTHO05D001357 1.1e-06 58.2 40 67.5
Potri.015G011800 Populus trichocarpa HOM05D001516 ORTHO05D001357 1.1e-06 58.2 40 67.5
BcaB03g12956 Brassica carinata HOM05D001516 ORTHO05D001357 1.4e-06 57.8 64 51.6
BcaC03g15507 Brassica carinata HOM05D001516 ORTHO05D001357 1.4e-06 57.8 69 47.8
A02p19380 Brassica napus HOM05D001516 ORTHO05D001357 1.4e-06 57.8 69 47.8
BolC2t09223H Brassica oleracea HOM05D001516 ORTHO05D001357 1.4e-06 57.8 69 47.8
BraA02t06977Z Brassica rapa HOM05D001516 ORTHO05D001357 1.4e-06 57.8 69 47.8
DCAR_020332 Daucus carota HOM05D001516 ORTHO05D001357 1.4e-06 57.8 41 61.0
Nitab4.5_0006000g0120 Nicotiana tabacum HOM05D001516 ORTHO05D001357 1.4e-06 57.8 136 35.3
Actinidia34228 Actinidia chinensis HOM05D001516 ORTHO05D001357 1.8e-06 57.4 42 61.9
C02p31890 Brassica napus HOM05D001516 ORTHO05D001357 1.8e-06 57.4 69 47.8
DCAR_026052 Daucus carota HOM05D001516 ORTHO05D001357 1.8e-06 57.4 107 40.2
Gohir.D09G243100 Gossypium hirsutum HOM05D001516 ORTHO05D001357 1.8e-06 57.4 53 58.5
Gorai.006G266900 Gossypium raimondii HOM05D001516 ORTHO05D001357 1.8e-06 57.4 53 58.5
Sabra12G0015600 Salix brachista HOM05D001516 ORTHO05D001357 1.8e-06 57.4 40 65.0
BcaC08g46992 Brassica carinata HOM05D001516 ORTHO05D001357 2.4e-06 57.0 111 37.8
Sabra15G0009500 Salix brachista HOM05D001516 ORTHO05D001357 2.4e-06 57.0 40 65.0
SEGI_20655 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 2.4e-06 57.0 40 62.5
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 2.4e-06 57.0 73 47.9
CARHR019440 Cardamine hirsuta HOM05D001516 ORTHO05D001357 3.1e-06 56.6 78 44.9
Cc02_g01410 Coffea canephora HOM05D001516 ORTHO05D001357 3.1e-06 56.6 42 61.9
SalBow2G3532 Salvia bowleyana HOM05D001516 ORTHO05D001357 3.1e-06 56.6 39 66.7
arahy.Tifrunner.gnm1.ann1.E901NL Arachis hypogaea HOM05D002184 ORTHO05D002379 4.1e-06 56.2 61 50.8
BcaC08g46993 Brassica carinata HOM05D001516 ORTHO05D001357 4.1e-06 56.2 106 38.7
Glyma.06G130000 Glycine max HOM05D001516 ORTHO05D001357 4.1e-06 56.2 68 47.1
Gohir.A09G242400 Gossypium hirsutum HOM05D001516 ORTHO05D001357 4.1e-06 56.2 54 53.7
Peaxi162Scf00740g00141 Petunia axillaris HOM05D001516 ORTHO05D001357 4.1e-06 56.2 42 59.5
CDE10G1282 Ceratophyllum demersum HOM05D001516 ORTHO05D001357 5.3e-06 55.8 44 56.8
DCAR_020327 Daucus carota HOM05D001516 ORTHO05D001357 5.3e-06 55.8 40 62.5
Duzib205G0600 Durio zibethinus HOM05D001516 ORTHO05D001357 5.3e-06 55.8 39 66.7
Gorai.003G121600 Gossypium raimondii HOM05D001516 ORTHO05D001357 5.3e-06 55.8 38 68.4
Rhsim03G0209600 Rhododendron simsii HOM05D001516 ORTHO05D001357 5.3e-06 55.8 40 65.0
THA.LOC104825152 Tarenaya hassleriana HOM05D001516 ORTHO05D001357 5.3e-06 55.8 42 64.3
TWI39G0641 Tripterygium wilfordii HOM05D001516 ORTHO05D001357 5.3e-06 55.8 39 64.1
A07p40290 Brassica napus HOM05D001516 ORTHO05D001357 7.0e-06 55.5 110 35.5
A08p30210 Brassica napus HOM05D001516 ORTHO05D001357 7.0e-06 55.5 67 46.3
BraA07t31572Z Brassica rapa HOM05D001516 ORTHO05D001357 7.0e-06 55.5 110 35.5
BraA08t34954Z Brassica rapa HOM05D001516 ORTHO05D001357 7.0e-06 55.5 67 46.3
Dinv35343 Davidia involucrata HOM05D001516 ORTHO05D001357 7.0e-06 55.5 40 65.0
Oeu010694.1 Olea europaea HOM05D001516 ORTHO05D001357 7.0e-06 55.5 41 61.0
SEGI_26765 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 7.0e-06 55.5 53 49.1
SEGI_28878 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 7.0e-06 55.5 74 40.5
Thecc.03G200500 Theobroma cacao HOM05D001516 ORTHO05D001357 7.0e-06 55.5 40 62.5
Medtr1g069025 Medicago truncatula HOM05D001516 ORTHO05D001357 9.1e-06 55.1 71 45.1
PGSC0003DMG400018531 Solanum tuberosum HOM05D001516 ORTHO05D001357 9.1e-06 55.1 44 61.4


User provided reference genes

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