Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 7.7e-98 360.5 190 100.0
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 1.2e-77 293.5 198 82.3
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 1.9e-51 206.5 191 60.2
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 4.0e-46 188.7 196 63.3
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 9.0e-46 187.6 186 58.6
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 1.2e-37 160.6 191 51.3
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 9.3e-35 151.0 193 48.7
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 1.1e-32 144.1 192 48.4
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 1.6e-31 140.2 193 45.1
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.5e-29 133.7 193 43.0
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 4.5e-29 132.1 156 50.0
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 8.4e-28 127.9 202 43.6
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 9.3e-27 124.4 195 43.1
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 6.1e-26 121.7 190 45.3
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 3.0e-25 119.4 192 46.4
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 1.6e-23 113.6 192 44.3
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 6.3e-23 111.7 187 44.4
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 8.2e-23 111.3 187 43.9
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 1.8e-22 110.2 181 40.9
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 3.1e-22 109.4 191 44.5
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 4.5e-21 105.5 204 46.1
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 4.5e-21 105.5 173 47.4
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 5.0e-20 102.1 172 44.2
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 1.9e-19 100.1 188 45.2
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 9.4e-19 97.8 156 41.0
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 2.1e-18 96.7 187 42.8
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 6.1e-18 95.1 190 37.9
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 3.0e-17 92.8 162 38.3
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 2.5e-16 89.7 173 35.8
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 3.3e-16 89.4 140 40.7
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 3.3e-16 89.4 157 42.0
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 5.7e-16 88.6 176 36.9
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 6.3e-15 85.1 189 38.1
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 1.8e-14 83.6 171 38.0
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 5.3e-14 82.0 174 41.4
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 5.3e-14 82.0 147 43.5
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 6.9e-14 81.6 174 41.4
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 1.2e-13 80.9 160 35.6
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 1.5e-13 80.5 140 39.3
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 2.6e-13 79.7 174 40.2
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 4.5e-13 79.0 189 35.4
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 4.5e-13 79.0 163 37.4
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 5.9e-13 78.6 187 34.2
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 7.7e-13 78.2 187 34.2
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 3.8e-12 75.9 167 40.7
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 3.8e-12 75.9 184 37.5
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 5.0e-12 75.5 146 37.0
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 6.5e-12 75.1 141 35.5
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 1.1e-11 74.3 191 36.6
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 1.4e-11 73.9 166 36.7
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 1.4e-11 73.9 167 40.7
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 1.4e-11 73.9 165 35.8
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 3.2e-11 72.8 181 37.0
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 4.2e-11 72.4 143 36.4
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 4.2e-11 72.4 143 36.4
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 5.5e-11 72.0 177 35.6
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 5.5e-11 72.0 150 40.7
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 7.2e-11 71.6 176 36.4
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 9.4e-11 71.2 189 34.4
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 1.2e-10 70.9 181 35.9
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 1.6e-10 70.5 143 35.0
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 1.6e-10 70.5 143 35.0
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 1.6e-10 70.5 143 35.0
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 2.1e-10 70.1 139 35.3
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 7.9e-10 68.2 184 33.7
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 1.0e-09 67.8 158 36.1
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 1.4e-09 67.4 140 31.4
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 1.8e-09 67.0 54 63.0
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 1.8e-09 67.0 54 63.0
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 3.0e-09 66.2 187 33.7
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 3.9e-09 65.9 166 34.9
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 8.8e-09 64.7 167 35.3
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 1.1e-08 64.3 172 36.0
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 1.5e-08 63.9 187 33.2
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 2.0e-08 63.5 60 58.3
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 2.6e-08 63.2 163 35.0
Sp5g13540 Schrenkiella parvula HOM05D011481 ORTHO05D009878 3.3e-08 62.8 140 32.1
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 4.4e-08 62.4 141 39.0
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 4.4e-08 62.4 150 35.3
CAN.G352.52 Capsicum annuum HOM05D008121 ORTHO05D009878 7.4e-08 61.6 187 31.0
HanXRQChr09g0272891 Helianthus annuus HOM05D008121 ORTHO05D009878 1.3e-07 60.8 158 33.5
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 1.7e-07 60.5 190 33.2
ECA232G1254 Erigeron canadensis HOM05D008121 ORTHO05D009878 2.2e-07 60.1 139 31.7
Hund05652 Selenicereus undatus HOM05D008121 ORTHO05D009878 2.2e-07 60.1 50 68.0
Ca_05561_v3 Cicer arietinum L. HOM05D008121 ORTHO05D009878 4.8e-07 58.9 133 36.8
PSO339G0123 Papaver somniferum HOM05D008121 ORTHO05D009878 4.1e-06 55.8 50 64.0


User provided reference genes

Program Settings