Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 8.0e-286 986.5 529 100.0
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.1e-178 630.6 514 72.0
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.5e-175 620.2 514 70.8
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 5.8e-159 565.1 525 68.2
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 3.4e-143 512.7 532 61.7
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 4.4e-143 512.3 517 61.5
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 7.6e-143 511.5 515 61.6
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 3.8e-142 509.2 514 62.6
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 5.1e-139 498.8 513 60.2
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 4.3e-138 495.7 534 60.7
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 7.6e-135 485.0 514 60.1
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 2.2e-134 483.4 515 56.9
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 6.4e-134 481.9 501 60.1
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.4e-133 479.9 527 58.4
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 2.4e-133 479.9 502 60.0
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 6.0e-132 475.3 502 59.6
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 7.8e-132 474.9 510 57.6
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 2.5e-130 469.9 524 59.0
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.6e-130 468.8 516 58.1
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 9.6e-130 468.0 516 57.9
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 4.8e-129 465.7 502 59.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 4.0e-128 462.6 527 57.1
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.3e-128 462.2 527 57.1
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 5.8e-127 458.8 515 58.4
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 7.6e-127 458.4 531 57.3
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 7.6e-127 458.4 504 58.9
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 1.3e-126 457.6 518 57.7
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.7e-126 457.2 530 57.4
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 3.2e-125 453.0 513 57.5
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 3.9e-123 446.0 538 56.7
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 3.3e-122 443.0 516 55.4
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.3e-121 441.0 512 56.1
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 9.0e-120 434.9 520 56.2
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.9e-117 427.2 528 55.5
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.9e-114 417.2 543 53.8
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 9.6e-114 414.8 507 55.2
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.3e-113 414.5 512 53.9
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 6.2e-113 412.1 541 51.4
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 4.0e-112 409.5 651 46.7
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 5.3e-112 409.1 553 53.7
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 5.8e-111 405.6 500 54.2
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.3e-110 404.4 499 53.9
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 8.4e-110 401.7 515 53.0
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.1e-109 401.4 532 53.0
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.9e-109 400.6 527 54.3
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.9e-109 400.6 528 52.8
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 2.7e-108 396.7 505 54.5
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 3.5e-108 396.4 510 52.5
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 5.1e-107 392.5 526 50.8
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 8.7e-107 391.7 514 52.1
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.1e-106 391.3 513 52.4
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 2.5e-106 390.2 499 54.7
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 3.7e-105 386.3 528 51.7
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 8.2e-105 385.2 514 53.9
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 5.0e-102 375.9 509 51.3
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 1.1e-101 374.8 511 50.7
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 3.0e-99 366.7 531 50.5
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.9e-98 364.0 546 48.5
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 5.7e-98 362.5 519 50.7
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 9.7e-98 361.7 505 51.9
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 6.9e-96 355.5 555 46.1
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 1.2e-95 354.8 552 49.8
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 3.4e-95 353.2 527 49.9
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 4.5e-95 352.8 534 50.9
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 1.1e-93 348.2 512 50.8
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.4e-88 331.3 539 47.9
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 7.0e-88 328.9 550 47.3
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 4.5e-87 326.2 537 47.9
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 4.5e-87 326.2 530 47.2
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 7.7e-87 325.5 509 47.0
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 2.4e-80 303.9 503 46.7
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 2.4e-80 303.9 526 46.8
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 5.3e-80 302.8 578 43.8
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 2.6e-79 300.4 500 45.4
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 4.5e-79 299.7 543 44.6
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 1.3e-78 298.1 567 41.8
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 8.5e-78 295.4 536 43.8
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.9e-77 294.3 547 44.8
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 2.5e-77 293.9 345 58.8
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 3.2e-77 293.5 509 46.2
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 1.6e-76 291.2 509 46.0
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 2.1e-76 290.8 541 42.9
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 2.1e-76 290.8 532 46.2
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 3.6e-76 290.0 569 42.2
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 3.3e-74 283.5 533 44.1
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 2.2e-73 280.8 522 42.5
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 2.8e-73 280.4 616 40.1
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 6.3e-73 279.3 535 42.6
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 2.0e-71 274.2 536 42.0
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.7e-71 273.9 533 43.2
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 5.9e-71 272.7 518 42.3
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 5.0e-70 269.6 544 41.7
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 6.5e-70 269.2 591 39.3
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 1.5e-69 268.1 570 40.4
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 1.9e-69 267.7 623 39.0
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 2.5e-69 267.3 590 40.0
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 4.2e-69 266.5 536 41.6
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 1.6e-68 264.6 504 42.7
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 2.1e-68 264.2 536 41.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.4e-67 261.5 563 39.4
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 2.3e-67 260.8 568 41.2
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 5.2e-67 259.6 574 39.4
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 1.2e-66 258.5 570 39.6
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 1.5e-66 258.1 573 39.8
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 1.5e-66 258.1 573 39.8
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 2.6e-66 257.3 573 40.3
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 2.6e-66 257.3 575 39.3
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 3.4e-66 256.9 526 42.0
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 9.8e-66 255.4 561 39.8
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 4.1e-64 250.0 613 37.4
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.2e-63 248.4 593 36.6
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 6.6e-62 242.7 526 41.4
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 8.6e-62 242.3 375 52.0
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 5.5e-61 239.6 497 41.2
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 2.8e-60 237.3 584 37.5
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 8.0e-60 235.7 508 41.5
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 3.4e-58 230.3 525 40.8
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 4.4e-58 229.9 258 58.1
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.4e-56 224.2 550 39.1
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 5.0e-54 216.5 472 39.8
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 1.4e-48 198.4 288 47.2
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 2.0e-42 177.9 163 63.8
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 3.2e-40 170.6 531 38.0
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 7.8e-39 166.0 293 48.1
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 2.3e-38 164.5 343 38.2
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.1e-35 155.6 164 57.3
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 1.4e-35 155.2 177 62.1
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 4.0e-35 153.7 260 48.5
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 1.3e-33 148.7 98 82.7
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 2.9e-33 147.5 352 38.1
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 1.2e-28 132.1 88 75.0
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 3.5e-23 114.0 105 63.8
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 6.0e-23 113.2 95 62.1
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 5.1e-22 110.2 516 32.0
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 4.3e-21 107.1 261 32.6
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 4.0e-19 100.5 543 29.3
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 5.1e-14 83.6 178 41.6
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 1.3e-12 79.0 352 31.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 1.3e-12 79.0 450 27.6
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.8e-12 77.8 352 30.7
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 3.6e-12 77.4 521 27.3
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 6.2e-12 76.6 485 30.5
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 2.4e-11 74.7 480 28.3
AagrBONN_evm.TU.Sc2ySwM_117.3581 Anthoceros agrestis HOM05D024742 ORTHO05D008955 1.7e-09 68.6 456 28.1
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 1.7e-09 68.6 376 27.7
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 2.9e-09 67.8 469 27.7
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.8e-09 67.4 422 28.9
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 8.4e-09 66.2 315 27.9
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 8.4e-09 66.2 341 28.4
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.1e-08 65.9 489 27.0
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.9e-08 65.1 492 24.8
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 2.4e-08 64.7 224 28.6
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 2.4e-08 64.7 537 26.8
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 3.2e-08 64.3 451 28.6
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 9.3e-08 62.8 491 24.8
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.1e-07 61.6 460 26.5
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 2.7e-07 61.2 476 28.2
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.7e-07 61.2 459 26.8
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 2.7e-07 61.2 459 26.8
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.7e-07 61.2 468 25.0
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 2.7e-07 61.2 94 37.2
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 3.5e-07 60.8 367 26.7
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 4.6e-07 60.5 496 29.4
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 4.6e-07 60.5 410 28.8
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 6.0e-07 60.1 421 27.8
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 1.0e-06 59.3 205 30.2
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 2.3e-06 58.2 480 25.8
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 2.3e-06 58.2 395 24.3
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.3e-06 58.2 455 27.0
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 2.3e-06 58.2 465 28.2
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 5.1e-06 57.0 252 27.0
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 5.1e-06 57.0 212 28.8
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 6.7e-06 56.6 474 26.6
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 6.7e-06 56.6 491 25.5
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 8.7e-06 56.2 465 26.7
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 8.7e-06 56.2 345 28.1
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 8.7e-06 56.2 477 24.9


User provided reference genes

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