Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1464.1 758 100.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1435.6 758 97.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1325.5 758 89.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1281.9 774 85.7
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1238.0 749 83.0
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1220.7 758 81.9
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1199.5 758 80.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1199.1 758 80.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1194.9 755 80.5
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1192.2 758 79.9
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1189.9 758 81.3
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1189.5 758 79.4
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1189.1 760 80.9
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1188.3 758 79.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1187.6 747 80.5
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1186.0 758 80.2
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1183.7 750 80.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1183.7 758 79.7
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1183.3 758 80.1
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1182.9 758 79.7
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1181.0 774 78.7
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1181.0 746 80.7
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1178.3 774 78.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1177.5 766 78.1
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1173.3 760 79.5
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1171.8 755 78.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1171.4 763 79.0
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1171.4 754 78.9
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1171.0 758 79.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1169.5 772 77.3
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1169.1 755 78.5
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1166.0 758 78.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1162.5 749 79.4
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1161.4 749 79.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1160.2 749 79.3
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1158.7 755 78.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1155.2 749 79.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1155.2 757 77.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1152.9 758 78.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1149.8 749 77.8
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1147.9 758 77.6
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1144.8 760 77.0
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1143.3 758 77.0
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1141.3 758 78.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1140.6 763 76.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1137.5 760 77.2
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1132.1 758 76.9
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 0.0e+00 1131.7 759 78.0
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1130.2 801 73.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1127.9 758 76.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1127.1 743 76.9
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 0.0e+00 1110.9 753 74.4
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 758 75.6
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 754 72.9
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 766 73.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1091.3 749 75.2
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1090.9 760 72.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 0.0e+00 1086.2 708 78.2
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 0.0e+00 1084.3 751 73.2
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1078.2 760 73.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.9e-310 1067.8 762 71.5
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 8.7e-310 1066.6 759 72.3
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 758 72.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 3.7e-308 1061.2 758 70.3
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.8e-308 1060.8 760 72.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 8.2e-308 1060.1 753 71.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 757 72.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 758 70.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.7e-306 1053.5 755 72.3
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.4e-304 1049.3 756 70.9
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 7.9e-303 1043.5 754 71.1
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.8e-302 1042.3 754 71.6
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.0e-302 1041.6 783 69.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.1e-302 1040.8 754 70.8
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.3e-301 1038.1 750 71.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.7e-300 1035.8 775 71.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 762 69.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 762 69.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.8e-299 1032.3 758 70.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 9.1e-299 1030.0 760 69.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 9.1e-299 1030.0 760 69.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 2.0e-298 1028.9 761 70.2
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 2.0e-298 1028.9 761 70.2
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 4.5e-298 1027.7 753 69.7
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.9e-296 1022.3 688 75.7
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 5.5e-296 1020.8 756 70.0
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 6.1e-295 1017.3 761 69.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 6.1e-295 1017.3 761 69.8
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.9e-294 1014.6 746 71.2
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 2.0e-293 1012.3 749 68.8
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 3.3e-293 1011.5 750 69.5
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.7e-292 1009.2 756 69.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.9e-289 998.4 755 69.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.5e-288 996.1 647 77.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.6e-282 976.1 751 67.9
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 3.8e-281 971.5 758 66.9
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.0e-277 959.1 736 68.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.8e-276 954.5 757 65.7
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.3e-275 951.0 709 70.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.3e-268 927.5 659 70.9
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.6e-263 912.9 762 62.7
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.3e-260 903.3 762 61.4
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.2e-260 902.5 813 60.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.2e-260 902.5 749 62.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.7e-258 895.6 651 71.9
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 7.8e-258 894.0 757 62.4
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-256 890.2 757 62.5
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 5.6e-256 887.9 758 62.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 5.6e-256 887.9 758 62.3
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-248 863.6 728 63.0
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.4e-246 856.7 528 83.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.1e-235 818.5 528 79.0
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 6.8e-230 801.2 753 56.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.6e-229 799.3 759 57.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 8.4e-228 794.3 536 75.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.5e-226 788.9 721 59.5
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.9e-212 742.7 533 71.3
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.4e-211 740.3 752 52.1
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.6e-210 735.3 752 53.6
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.3e-208 728.8 742 53.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 4.3e-208 728.8 559 68.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.7e-186 656.4 739 49.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.0e-185 654.4 749 50.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.5e-171 606.7 381 81.4
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.3e-156 557.8 624 49.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 4.3e-147 526.2 345 77.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.2e-141 508.1 390 67.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-128 463.4 472 57.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 5.6e-115 419.5 734 36.1
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-93 347.8 227 78.9
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 5.6e-91 339.7 762 30.2
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 6.3e-82 309.7 833 29.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-81 307.0 532 40.0
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.2e-77 295.4 224 69.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.2e-55 221.5 223 55.6
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 5.5e-46 190.3 204 53.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.4e-44 185.7 120 76.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.7e-40 171.4 164 58.5
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 5.5e-38 163.7 151 58.3
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.7e-34 151.0 102 72.5
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.2e-32 146.0 113 67.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.5e-30 139.0 218 44.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.5e-30 138.3 91 73.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-29 136.0 235 41.3
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 7.5e-27 126.7 229 39.7
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 5.4e-25 120.6 115 53.9
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.9e-24 117.1 80 70.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 9.5e-22 109.8 91 64.8
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-19 102.8 75 70.7
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.9e-17 95.5 98 49.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.6e-16 92.4 56 85.7
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 7.8e-16 90.1 79 60.8
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.3e-15 89.4 96 45.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.9e-14 85.5 111 45.0
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.3e-14 84.7 101 48.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.3e-14 84.3 67 65.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.8e-11 73.9 65 58.5
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 7.5e-11 73.6 127 36.2
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 2.9e-10 71.6 55 63.6
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.9e-10 70.9 73 50.7
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 3.2e-09 68.2 73 49.3
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.0e-07 63.2 84 42.9


User provided reference genes

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