Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 7.4e-66 253.8 137 100.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.5e-45 185.7 123 80.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.3e-43 179.1 123 79.7
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 9.7e-42 173.7 125 80.8
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.7e-41 171.8 133 74.4
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.3e-41 171.0 130 76.2
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.9e-39 164.5 114 79.8
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.3e-38 163.3 124 73.4
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.2e-38 162.5 131 71.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.8e-38 161.8 112 80.4
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 3.8e-38 161.8 124 72.6
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.0e-38 161.4 115 79.1
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 5.0e-38 161.4 123 74.8
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.5e-38 161.0 123 75.6
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.9e-37 159.5 119 72.3
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.2e-37 158.3 122 74.6
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.2e-37 158.3 121 73.6
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 9.4e-37 157.1 107 76.6
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 9.4e-37 157.1 123 71.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 6.1e-36 154.5 122 72.1
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 6.7e-35 151.0 124 72.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 8.8e-35 150.6 133 67.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.5e-34 149.8 119 68.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 2.6e-34 149.1 110 72.7
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 7.4e-34 147.5 144 60.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.3e-33 146.7 116 69.0
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.3e-33 146.7 121 66.9
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.2e-33 146.0 120 70.0
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.8e-33 145.6 126 65.1
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.8e-33 145.6 126 65.1
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 3.7e-33 145.2 120 70.0
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 3.7e-33 145.2 132 65.2
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 6.3e-33 144.4 113 69.9
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 8.2e-33 144.1 121 69.4
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.1e-32 143.7 121 65.3
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.4e-32 143.3 113 69.9
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.4e-32 143.3 109 75.2
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.8e-32 142.9 113 69.9
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.5e-31 139.8 131 62.6
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.5e-31 139.8 104 74.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.0e-31 139.4 123 65.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 4.5e-31 138.3 122 67.2
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 5.9e-31 137.9 123 64.2
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 5.9e-31 137.9 122 66.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 5.9e-31 137.9 120 66.7
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 7.7e-31 137.5 124 67.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.7e-31 137.5 120 67.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.0e-30 137.1 126 64.3
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.7e-30 136.3 113 67.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 5.0e-30 134.8 109 68.8
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 5.0e-30 134.8 109 68.8
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.0e-30 134.8 121 66.9
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 6.5e-30 134.4 120 65.8
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.5e-30 134.4 118 66.9
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-30 134.4 121 66.9
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.1e-29 133.7 123 64.2
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.4e-29 133.3 136 58.8
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.9e-29 132.9 111 66.7
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-29 132.9 121 66.1
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 5.5e-29 131.3 149 55.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.2e-28 130.2 122 63.9
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.2e-28 130.2 120 63.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.2e-28 130.2 113 64.6
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.6e-28 128.6 109 65.1
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 4.7e-28 128.3 118 61.9
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 6.1e-28 127.9 106 69.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 6.1e-28 127.9 117 66.7
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.1e-28 127.9 117 66.7
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.0e-28 127.5 125 57.6
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.0e-27 127.1 117 66.7
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.0e-27 127.1 112 64.3
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 2.3e-27 125.9 121 61.2
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.0e-27 125.6 99 69.7
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.9e-27 125.2 114 65.8
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.9e-27 125.2 117 66.7
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 3.9e-27 125.2 125 60.0
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.2e-27 124.8 117 65.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 8.8e-27 124.0 126 59.5
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.8e-27 124.0 126 59.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.8e-27 124.0 126 59.5
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.0e-26 122.9 121 57.9
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.0e-26 122.9 134 56.7
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.0e-26 122.9 122 66.4
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.6e-26 122.5 115 59.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 5.7e-26 121.3 138 55.8
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.3e-25 120.2 138 54.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.2e-25 119.4 127 58.3
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.2e-25 119.4 133 57.1
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 3.7e-25 118.6 71 83.1
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 4.8e-25 118.2 89 73.0
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-24 116.3 118 61.9
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 4.1e-24 115.2 154 49.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 7.0e-24 114.4 108 58.3
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 9.1e-24 114.0 96 66.7
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.6e-23 113.2 87 70.1
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.0e-23 112.8 111 59.5
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.6e-23 112.5 147 51.7
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.2e-22 109.4 106 61.3
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.9e-22 109.0 141 51.8
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.8e-22 108.6 96 65.6
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-21 106.7 106 58.5
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 2.5e-21 105.9 84 64.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-21 105.9 128 53.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.2e-21 105.5 104 60.6
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.2e-21 105.5 125 56.0
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 4.2e-21 105.1 106 59.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.5e-21 104.8 118 55.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.6e-20 103.2 108 56.5
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.7e-20 102.4 118 53.4
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.7e-20 101.7 135 52.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.0e-19 99.0 114 51.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 6.8e-19 97.8 109 55.0
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.2e-18 97.1 106 51.9
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.0e-18 96.3 101 52.5
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.7e-18 94.7 118 51.7
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.7e-17 93.2 104 50.0
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.2e-17 92.8 121 51.2
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.7e-17 92.0 107 54.2
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.4e-16 90.1 120 44.2
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 3.1e-16 89.0 113 45.1
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 5.3e-16 88.2 82 62.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 7.7e-15 84.3 73 67.1
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-14 83.6 77 58.4
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.2e-14 82.8 49 98.0
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.0e-14 81.6 114 47.4
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-14 81.3 77 62.3
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-14 81.3 77 62.3
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.5e-14 81.3 77 62.3
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 8.5e-14 80.9 44 84.1
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-13 80.1 56 69.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.9e-13 79.7 172 43.0
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 4.2e-13 78.6 44 81.8
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.1e-12 76.3 56 71.4
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.4e-11 73.6 59 71.2
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 3.0e-11 72.4 93 50.5
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 8.8e-11 70.9 110 44.5
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 4.4e-10 68.6 104 48.1
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 4.8e-09 65.1 66 56.1
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.8e-08 63.2 41 87.8
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 3.1e-08 62.4 89 44.9
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 9.1e-08 60.8 58 56.9
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.3e-06 57.0 66 51.5
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 2.9e-06 55.8 59 45.8


User provided reference genes

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