Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 7.8e-275 949.9 497 100.0
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 9.4e-220 766.9 498 81.3
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 1.2e-190 670.2 445 75.3
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 2.5e-180 636.0 446 71.5
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 1.1e-154 550.8 447 63.1
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.0e-149 534.3 448 63.8
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 6.9e-146 521.5 446 61.0
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 7.4e-140 501.5 450 58.7
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 3.4e-137 492.7 447 57.9
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 7.6e-137 491.5 447 59.7
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.9e-135 486.9 446 57.2
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 9.3e-135 484.6 447 56.6
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 1.6e-134 483.8 445 56.0
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.6e-134 483.8 448 57.1
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 2.7e-134 483.0 457 56.5
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 2.3e-133 479.9 448 56.7
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 2.3e-133 479.9 448 56.7
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.6e-131 473.8 448 54.7
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 9.0e-130 468.0 453 55.0
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.6e-129 466.5 447 55.5
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 1.3e-128 464.2 445 53.7
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.4e-127 460.7 448 54.9
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 3.5e-126 456.1 457 54.9
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 3.5e-126 456.1 449 53.2
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 5.7e-124 448.7 455 54.3
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 7.4e-124 448.4 446 53.8
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 7.4e-124 448.4 447 55.0
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 1.6e-123 447.2 449 55.0
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.6e-123 447.2 446 54.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.1e-123 446.8 446 54.0
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 2.1e-123 446.8 448 55.1
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 6.3e-123 445.3 469 51.6
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 8.2e-123 444.9 404 57.2
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 3.1e-122 443.0 450 53.3
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.5e-121 440.7 451 54.1
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 2.2e-120 436.8 452 51.8
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 8.5e-120 434.9 448 53.3
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 8.5e-120 434.9 446 52.7
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 1.1e-119 434.5 463 51.8
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 1.2e-118 431.0 424 52.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.2e-118 431.0 454 53.5
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 4.6e-118 429.1 458 52.6
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 5.9e-113 412.1 446 51.1
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 1.9e-111 407.1 450 51.3
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 2.5e-111 406.8 457 50.1
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 1.2e-110 404.4 467 48.6
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.0e-109 399.8 455 49.7
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 5.7e-108 395.6 452 48.0
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.2e-107 393.7 415 53.5
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.8e-107 393.3 448 47.5
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 3.1e-106 389.8 468 44.4
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 2.6e-105 386.7 457 49.2
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 4.5e-105 386.0 448 47.1
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 7.7e-105 385.2 447 47.2
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 3.8e-104 382.9 453 48.1
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 4.2e-103 379.4 453 48.3
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.8e-99 366.7 449 45.4
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 3.1e-98 363.2 448 44.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 5.3e-98 362.5 444 45.7
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.6e-97 360.9 451 44.1
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.6e-97 360.1 444 44.1
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 5.9e-97 359.0 449 45.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 1.3e-96 357.8 438 45.4
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.3e-96 357.8 449 46.8
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.7e-96 357.5 445 44.0
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 2.9e-96 356.7 448 44.4
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 6.5e-96 355.5 458 46.1
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 8.5e-96 355.1 440 48.6
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.9e-95 354.0 452 44.2
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 8.8e-93 345.1 461 43.8
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 3.7e-91 339.7 446 43.5
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 2.7e-89 333.6 532 39.8
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 4.5e-89 332.8 453 43.5
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 6.5e-88 328.9 250 60.8
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 8.5e-88 328.6 443 45.8
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.7e-86 323.6 438 42.9
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 5.2e-85 319.3 394 50.0
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.1e-82 311.6 464 40.1
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.7e-81 307.0 273 59.0
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.9e-81 305.8 471 39.3
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.0e-80 305.1 470 39.1
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 5.5e-79 299.3 471 40.1
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 5.5e-79 299.3 227 66.1
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 7.2e-79 298.9 465 39.8
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.2e-78 298.1 465 40.2
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.1e-78 297.4 213 68.5
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.0e-76 290.8 231 61.5
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 5.0e-72 276.2 447 38.9
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 3.6e-70 270.0 448 37.3
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 2.0e-68 264.2 291 52.2
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 4.4e-68 263.1 343 43.7
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 1.0e-64 251.9 448 36.2
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.2e-62 245.0 462 33.3
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 8.0e-62 242.3 353 40.5
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 2.2e-59 234.2 353 43.3
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.1e-53 215.3 141 68.1
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.3e-53 214.2 175 62.9
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.9e-53 212.2 141 66.7
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.7e-51 208.0 151 69.5
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.9e-51 206.5 151 69.5
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.9e-50 204.5 211 51.7
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 4.1e-50 203.4 144 65.3
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 4.1e-50 203.4 167 58.7
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.2e-49 201.8 152 66.4
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 7.8e-49 199.1 155 68.4
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 2.5e-47 194.1 152 65.1
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.6e-46 191.4 127 67.7
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.8e-46 190.7 218 45.4
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.9e-43 179.9 243 42.4
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 4.1e-42 176.8 458 29.3
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.1e-42 176.8 232 43.1
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 7.1e-42 176.0 260 40.0
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 9.2e-42 175.6 331 36.6
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.0e-40 172.2 484 30.2
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-40 171.4 199 50.3
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.9e-40 170.2 118 65.3
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.8e-38 164.1 168 52.4
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 1.4e-37 161.8 452 29.2
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 2.4e-37 161.0 121 66.1
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.5e-36 158.3 277 39.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 1.1e-34 152.1 112 55.4
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.1e-33 147.9 309 36.9
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.6e-33 146.7 368 30.7
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.5e-31 141.0 140 52.9
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.2e-27 127.9 131 42.7
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.3e-24 118.6 124 46.8
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 5.1e-24 116.7 177 34.5
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 7.4e-23 112.8 153 47.1
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 6.2e-22 109.8 148 45.3
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.3e-21 106.7 80 61.2
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 2.6e-20 104.4 70 72.9
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 6.4e-19 99.8 165 42.4
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 1.9e-10 71.6 164 33.5
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.2e-09 68.9 106 41.5
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.3e-08 65.5 70 50.0


User provided reference genes

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