Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 0.0e+00 1200.3 636 100.0
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.6e-264 914.8 643 80.1
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 5.4e-204 714.9 540 70.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.3e-202 709.5 706 61.6
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.1e-191 672.5 646 57.9
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 5.3e-191 671.8 597 61.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 6.9e-183 644.8 645 56.4
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.9e-183 644.8 602 56.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.2e-182 644.0 592 60.0
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.0e-182 643.3 596 58.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.3e-181 640.6 644 56.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.7e-181 640.2 602 58.3
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.2e-181 639.8 599 58.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.9e-181 639.4 590 60.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.9e-181 638.6 599 59.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 4.9e-181 638.6 634 55.7
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 6.4e-181 638.3 594 60.3
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-180 637.5 590 59.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.2e-180 636.0 647 56.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 5.5e-180 635.2 601 57.1
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.2e-179 634.0 618 57.4
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.6e-179 632.1 632 57.1
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 5.1e-178 628.6 599 58.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 4.3e-177 625.5 602 56.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.6e-177 624.4 599 57.8
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.6e-176 623.6 589 58.6
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.1e-176 623.2 599 56.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.8e-175 620.2 599 57.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.3e-173 614.0 640 54.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.2e-173 613.2 566 60.8
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.4e-172 610.5 581 57.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.2e-172 609.4 590 57.5
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.5e-172 608.6 595 56.8
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 2.7e-171 606.3 640 54.1
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.5e-171 605.9 590 57.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.6e-171 605.5 599 56.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.6e-171 605.5 595 56.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.3e-170 604.0 619 55.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.3e-170 603.2 590 56.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-169 600.5 642 54.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.3e-169 599.4 616 54.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 5.7e-169 598.6 598 55.9
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 9.6e-169 597.8 601 55.7
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 9.6e-169 597.8 616 56.2
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.6e-168 597.0 581 57.1
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.1e-167 592.8 652 52.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.9e-167 591.7 598 55.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-166 590.5 598 56.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 4.5e-166 589.0 592 54.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-165 587.0 664 52.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.9e-165 586.3 640 51.6
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.5e-164 583.2 688 51.6
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.2e-164 582.8 651 53.1
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.2e-164 582.8 688 49.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-163 580.9 648 51.9
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.7e-163 579.7 686 49.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.1e-163 578.6 642 51.6
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.3e-162 576.6 642 51.6
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-162 576.2 592 55.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.7e-162 575.1 592 55.9
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.7e-162 574.7 598 55.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.5e-161 573.9 601 54.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.5e-161 573.2 533 59.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.6e-160 570.5 592 55.1
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.1e-159 567.8 668 51.8
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.1e-159 565.8 577 55.6
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.6e-158 563.1 596 53.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 3.4e-158 562.8 631 51.3
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.8e-157 559.3 508 58.9
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 9.4e-156 554.7 605 55.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.6e-155 552.4 593 51.8
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 8.8e-154 548.1 589 50.8
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-150 537.0 600 51.3
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 5.9e-150 535.4 631 48.3
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 7.7e-150 535.0 537 55.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.1e-148 531.2 590 51.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.6e-147 527.3 592 50.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 3.6e-147 526.2 634 48.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-146 524.2 593 50.9
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.5e-145 520.8 595 50.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.5e-145 520.8 592 50.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 3.3e-145 519.6 610 50.5
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 7.4e-145 518.5 590 50.5
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.4e-145 518.5 592 50.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 9.7e-145 518.1 589 51.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.7e-145 518.1 633 47.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-144 517.3 637 48.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 6.3e-144 515.4 589 51.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 8.2e-144 515.0 663 45.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.2e-144 515.0 592 50.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 8.2e-144 515.0 615 49.4
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.5e-142 509.6 594 50.3
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 4.5e-142 509.2 594 49.7
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.2e-140 501.9 412 60.9
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.1e-139 500.4 535 53.3
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.0e-138 496.1 535 52.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 6.7e-138 495.4 638 46.4
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 4.8e-136 489.2 623 46.9
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 8.2e-136 488.4 576 49.0
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.9e-133 479.9 429 58.0
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.9e-133 479.9 636 45.4
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.2e-132 476.5 545 49.2
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.6e-131 474.2 592 48.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.4e-130 471.1 600 47.0
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.0e-129 467.2 453 54.3
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-126 458.0 600 46.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 6.5e-125 452.2 655 42.1
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.1e-124 451.4 628 43.6
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.6e-123 447.6 562 45.6
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.6e-121 440.3 589 44.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 5.7e-121 439.1 650 40.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.8e-120 436.8 560 48.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.3e-117 427.2 537 44.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 4.3e-116 422.9 284 71.1
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.3e-116 422.9 610 43.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.6e-115 421.0 635 40.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 8.3e-112 408.7 598 45.0
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 9.2e-111 405.2 378 54.8
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.2e-111 405.2 369 56.1
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.6e-107 393.3 266 70.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.5e-105 387.9 548 45.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 3.7e-104 383.3 538 44.6
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 8.6e-101 372.1 486 45.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-97 361.3 279 60.6
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 8.3e-96 355.5 427 45.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.4e-95 354.8 411 46.0
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.4e-95 354.8 378 52.4
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.1e-95 353.2 427 44.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.4e-95 352.8 403 46.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.1e-95 352.4 501 42.1
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-94 351.7 405 46.7
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.0e-94 349.4 671 34.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 3.9e-93 346.7 505 41.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.6e-93 345.9 669 35.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 8.6e-93 345.5 665 35.2
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.6e-93 345.5 663 35.0
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.5e-92 344.7 428 44.4
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-92 344.4 665 35.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.3e-92 343.6 205 79.0
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-92 343.2 663 35.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.8e-90 337.8 205 76.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.9e-88 330.5 284 54.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.2e-87 327.0 470 40.9
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.7e-86 323.9 592 36.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.7e-86 323.9 592 36.0
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.8e-86 322.4 531 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.3e-85 321.6 547 35.6
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.1e-85 319.7 591 35.9
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.1e-85 319.7 591 35.9
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.6e-84 315.5 202 72.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.7e-77 292.4 468 43.6
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 7.3e-76 289.3 365 48.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 4.9e-72 276.6 649 34.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 4.3e-68 263.5 270 47.4
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.4e-58 231.1 400 41.0
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 3.1e-58 230.7 258 53.1
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.9e-56 224.2 627 30.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.2e-54 218.8 166 63.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.7e-51 207.2 685 29.9
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.3e-44 183.7 409 33.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 4.5e-41 173.7 180 52.2
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.6e-38 164.1 104 72.1
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.4e-36 156.4 79 93.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 5.5e-31 140.2 284 33.1
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.7e-29 133.3 67 92.5
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 8.8e-29 132.9 111 60.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.2e-27 128.3 246 37.8
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-26 124.4 65 90.8
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 8.8e-21 106.3 255 33.7
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 3.7e-19 100.9 171 33.3
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.2e-19 99.8 55 83.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.8e-13 82.0 244 30.3
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 7.5e-12 76.6 189 39.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.7e-11 75.5 46 71.7


User provided reference genes

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