Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 7.1e-127 457.2 223 100.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 9.7e-92 340.5 223 78.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 2.9e-72 275.8 222 66.2
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.6e-62 243.4 223 58.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 4.7e-62 241.9 223 59.2
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.0e-61 240.7 231 58.4
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.3e-61 239.6 223 59.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.3e-61 239.6 251 54.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 5.2e-61 238.4 223 56.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.0e-60 236.5 223 57.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 5.8e-60 235.0 225 56.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 7.5e-60 234.6 204 62.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.5e-60 234.6 223 56.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 9.8e-60 234.2 272 49.3
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-59 233.4 223 56.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.9e-59 232.6 226 58.4
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.9e-59 231.9 196 61.7
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.9e-58 229.9 225 56.0
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 3.2e-58 229.2 223 56.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 3.2e-58 229.2 226 56.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.4e-58 228.4 227 58.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.4e-58 228.4 228 57.0
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 9.2e-58 227.6 230 56.1
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.6e-57 226.9 188 62.2
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.0e-57 226.5 224 55.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-57 226.1 223 57.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.7e-57 226.1 223 53.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.7e-57 226.1 223 56.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 3.5e-57 225.7 230 53.9
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 3.5e-57 225.7 223 57.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.6e-57 225.3 226 56.6
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.6e-57 225.3 223 57.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.6e-57 225.3 223 57.4
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 6.0e-57 224.9 194 60.3
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 7.8e-57 224.6 224 51.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.0e-56 224.2 223 52.5
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.3e-56 223.0 223 56.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.0e-56 221.9 266 50.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.0e-56 221.9 226 54.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.6e-56 221.5 223 56.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.6e-56 221.1 226 55.8
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 8.6e-56 221.1 227 54.6
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.1e-55 220.7 224 53.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.5e-55 220.3 227 54.6
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.9e-55 219.9 226 55.3
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.3e-55 218.8 227 55.5
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 9.5e-55 217.6 226 55.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.2e-54 217.2 237 51.9
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.6e-54 216.9 226 53.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.6e-54 216.9 225 56.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.1e-54 216.5 224 51.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.6e-54 215.7 225 54.2
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 8.1e-54 214.5 225 52.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.1e-53 214.2 229 53.3
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.4e-53 213.8 233 52.4
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.8e-53 213.4 226 53.5
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-53 212.6 223 53.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.1e-53 212.6 224 55.4
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 4.0e-53 212.2 232 52.6
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 8.9e-53 211.1 225 52.4
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 8.9e-53 211.1 233 51.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 8.9e-53 211.1 207 53.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.5e-52 210.3 227 52.4
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.6e-52 209.5 223 52.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.6e-52 209.5 223 52.9
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.4e-52 209.1 226 53.5
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.4e-52 208.8 171 60.8
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 7.5e-52 208.0 223 51.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 7.5e-52 208.0 229 50.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 9.8e-52 207.6 236 52.5
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 9.8e-52 207.6 224 53.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.7e-51 206.8 223 50.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.2e-51 206.5 223 51.6
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.9e-51 206.1 183 57.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.7e-51 205.7 223 50.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 4.9e-51 205.3 224 50.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.9e-51 205.3 223 49.8
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 8.3e-51 204.5 180 57.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.4e-50 203.8 175 59.4
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.4e-50 203.8 223 52.9
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.9e-50 203.4 224 51.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.4e-50 203.0 207 52.7
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 4.1e-50 202.2 227 49.8
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 4.1e-50 202.2 171 59.1
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.4e-50 201.8 230 50.4
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.4e-50 201.8 229 50.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 7.1e-50 201.4 194 56.2
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.2e-49 200.7 233 50.2
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-49 200.3 226 49.6
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.6e-49 200.3 230 52.2
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.1e-49 199.9 231 50.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.7e-49 199.5 231 49.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.5e-49 199.1 235 48.5
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.0e-49 198.4 225 51.6
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 6.0e-49 198.4 186 56.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 6.0e-49 198.4 199 54.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.7e-48 196.8 170 58.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.7e-48 196.8 230 49.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.3e-48 196.4 230 50.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-48 196.1 199 53.8
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.0e-48 196.1 223 49.3
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.9e-48 195.7 228 49.6
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.9e-48 195.7 177 58.2
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 8.6e-48 194.5 227 48.5
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-47 194.1 226 49.1
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.9e-47 193.4 237 46.4
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.3e-47 192.6 245 47.3
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.3e-47 192.6 223 46.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 9.5e-47 191.0 230 48.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 9.5e-47 191.0 230 49.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-46 189.9 226 48.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 4.7e-46 188.7 234 47.4
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 8.1e-46 188.0 230 46.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.8e-45 186.8 223 47.5
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.2e-44 184.1 155 59.4
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.9e-43 179.5 175 53.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 8.4e-43 177.9 229 47.2
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-42 177.6 223 47.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.1e-42 174.9 200 52.5
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-40 169.9 158 54.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.1e-40 168.7 200 49.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 6.6e-40 168.3 169 53.8
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.2e-37 158.7 159 52.2
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.7e-33 146.4 164 45.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.5e-31 140.6 166 42.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.3e-31 138.3 128 54.7
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.3e-31 138.3 165 44.2
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.1e-30 136.7 148 52.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 6.2e-30 135.2 199 44.7
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-29 134.0 73 78.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 6.4e-27 125.2 65 84.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.9e-26 123.6 73 74.0
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.7e-24 115.2 171 44.4
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.5e-23 113.2 195 36.4
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 7.4e-23 111.7 62 75.8
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.6e-23 111.3 127 48.8
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.8e-22 109.0 121 51.2
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 6.2e-22 108.6 112 57.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.3e-15 86.3 86 55.8
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 6.2e-14 82.0 143 32.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.1e-13 79.7 157 30.6
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-12 77.4 101 43.6
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-09 67.8 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.9e-07 60.5 91 38.5


User provided reference genes

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