Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07030 Corylus avellana HOM05D002645 ORTHO05D002741 3.1e-60 235.0 120 100.0
Cfa000025 Carpinus fangiana HOM05D002645 ORTHO05D002741 2.1e-48 195.7 117 88.9
CiPaw.09G109600 Carya illinoinensis HOM05D002645 ORTHO05D002741 1.0e-31 140.2 120 66.7
Potri.006G003900 Populus trichocarpa HOM05D002645 ORTHO05D002741 3.0e-23 112.1 129 49.6
Sabra06G0003300 Salix brachista HOM05D002645 ORTHO05D002741 4.0e-23 111.7 120 54.2
CSS0012457 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 5.2e-23 111.3 119 52.9
CSS0023137 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 5.2e-23 111.3 119 52.9
QL05p066957 Quercus lobata HOM05D002645 ORTHO05D002741 5.2e-23 111.3 125 64.8
QL05p067304 Quercus lobata HOM05D002645 ORTHO05D002741 5.2e-23 111.3 125 64.8
Atru.chr1.2243 Acer truncatum HOM05D002645 ORTHO05D002741 1.5e-22 109.8 125 52.8
Thecc.06G241800 Theobroma cacao HOM05D002645 ORTHO05D002741 1.7e-21 106.3 94 59.6
Actinidia14194 Actinidia chinensis HOM05D002645 ORTHO05D002741 4.5e-19 98.2 90 58.9
TAR517G0005 Trochodendron aralioides HOM05D002645 ORTHO05D002741 1.0e-18 97.1 108 50.0
Gohir.A06G203701 Gossypium hirsutum HOM05D002645 ORTHO05D002741 3.8e-18 95.1 100 54.0
QL05p066931 Quercus lobata HOM05D002645 ORTHO05D002741 3.8e-18 95.1 98 56.1
GSVIVG01002204001 Vitis vinifera HOM05D002645 ORTHO05D002741 6.5e-18 94.4 60 78.3
Dinv07155 Davidia involucrata HOM05D002645 ORTHO05D002741 3.2e-17 92.0 100 57.0
Gohir.D06G218100 Gossypium hirsutum HOM05D002645 ORTHO05D002741 3.2e-17 92.0 101 53.5
Duzib192G0266 Durio zibethinus HOM05D002645 ORTHO05D002741 4.2e-17 91.7 92 59.8
ClCG01G021190 Citrullus lanatus HOM05D002645 ORTHO05D002741 5.5e-17 91.3 122 49.2
Lj6g0025630 Lotus japonicus HOM05D002645 ORTHO05D002741 5.5e-17 91.3 97 52.6
Manes.09G084200 Manihot esculenta HOM05D002645 ORTHO05D002741 9.4e-17 90.5 81 63.0
Gorai.010G248200 Gossypium raimondii HOM05D002645 ORTHO05D002741 1.2e-16 90.1 103 51.5
MELO3C008004.2 Cucumis melo HOM05D002645 ORTHO05D002741 2.7e-16 89.0 98 51.0
Ciclev10016013m.g Citrus clementina HOM05D002645 ORTHO05D002741 8.0e-16 87.4 80 55.0
CsaV3_6G048200 Cucumis sativus L. HOM05D002645 ORTHO05D002741 8.0e-16 87.4 124 46.0
TWI63G0163 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 8.8e-15 84.0 88 61.4
Sed0027781 Sechium edule HOM05D002645 ORTHO05D002741 1.5e-14 83.2 119 46.2
PGR004G1691 Punica granatum HOM05D002645 ORTHO05D002741 7.5e-14 80.9 112 44.6
PGR042G0736 Punica granatum HOM05D002645 ORTHO05D002741 1.7e-13 79.7 107 49.5
MSTRG.13104 Avicennia marina HOM05D002645 ORTHO05D002741 2.8e-13 79.0 91 51.6
PGR042G2084 Punica granatum HOM05D002645 ORTHO05D002741 2.8e-13 79.0 107 46.7
Haze_07032 Corylus avellana HOM05D002645 ORTHO05D002741 3.7e-13 78.6 79 53.2
Glyma.15G121100 Glycine max HOM05D002645 ORTHO05D002741 1.1e-12 77.0 107 45.8
Haze_07000 Corylus avellana HOM05D002645 ORTHO05D002741 1.8e-12 76.3 81 55.6
VMungo0540G0592 Vigna mungo HOM05D002645 ORTHO05D002741 2.4e-12 75.9 102 45.1
MELO3C026093.2 Cucumis melo HOM05D002645 ORTHO05D002741 7.0e-12 74.3 84 53.6
Phvul.006G136600 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 7.0e-12 74.3 102 43.1
MBI15_g36663_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 1.2e-11 73.6 105 46.7
MD05G1362400 Malus domestica HOM05D002645 ORTHO05D002741 1.2e-11 73.6 116 43.1
Prupe.4G003000 Prunus persica HOM05D002645 ORTHO05D002741 1.6e-11 73.2 75 53.3
ClCG01G011280 Citrullus lanatus HOM05D002645 ORTHO05D002741 2.0e-11 72.8 84 50.0
Phvul.003G088000 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 2.7e-11 72.4 94 47.9
vmacro03600 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 2.7e-11 72.4 99 52.5
CiPaw.10G082900 Carya illinoinensis HOM05D002645 ORTHO05D002741 3.5e-11 72.0 74 51.4
Phvul.003G087900 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 4.5e-11 71.6 83 49.4
MBI15_g24507_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 1.0e-10 70.5 85 47.1
Lj6g0007328 Lotus japonicus HOM05D002645 ORTHO05D002741 1.7e-10 69.7 80 52.5
Aa31sc219G60 Aethionema arabicum HOM05D002645 ORTHO05D002741 2.3e-10 69.3 85 49.4
Eucgr.E03841 Eucalyptus grandis HOM05D002645 ORTHO05D002741 2.3e-10 69.3 124 43.5
Glyma.07G268800 Glycine max HOM05D002645 ORTHO05D002741 2.3e-10 69.3 91 47.3
HPP92_015793 Vanilla planifolia HOM05D002645 ORTHO05D002741 2.3e-10 69.3 67 56.7
Sed0010245 Sechium edule HOM05D002645 ORTHO05D002741 2.9e-10 68.9 87 49.4
Ah.09g233840 Amaranthus hybridus HOM05D002645 ORTHO05D002741 3.8e-10 68.6 131 38.9
Cpa.g.sc27.218 Carica papaya HOM05D002645 ORTHO05D002741 3.8e-10 68.6 80 55.0
Thhalv10001004m.g Eutrema salsugineum HOM05D002645 ORTHO05D002741 3.8e-10 68.6 84 47.6
Psat0s3230g0120 Pisum sativum HOM05D002645 ORTHO05D002741 3.8e-10 68.6 81 53.1
Lj4g0000891 Lotus japonicus HOM05D002645 ORTHO05D002741 5.0e-10 68.2 93 46.2
TPR.G5969 Trifolium pratense HOM05D002645 ORTHO05D002741 8.6e-10 67.4 98 50.0
Hma1.2p1_1175F.1_g264120 Hydrangea macrophylla HOM05D002645 ORTHO05D002741 1.1e-09 67.0 67 52.2
Lalb_Chr20g0119581 Lupinus albus HOM05D002645 ORTHO05D002741 1.1e-09 67.0 109 41.3
Nn1g07769 Nelumbo nucifera HOM05D002645 ORTHO05D002741 1.1e-09 67.0 80 42.5
Sopen04g007140 Solanum pennellii HOM05D002645 ORTHO05D002741 1.1e-09 67.0 104 46.2
EL10Ac8g20271 Beta vulgaris HOM05D002645 ORTHO05D002741 1.5e-09 66.6 60 56.7
BcaC03g16988 Brassica carinata HOM05D002645 ORTHO05D002741 1.5e-09 66.6 80 50.0
C02p48890 Brassica napus HOM05D002645 ORTHO05D002741 1.5e-09 66.6 80 50.0
BolC2t10984H Brassica oleracea HOM05D002645 ORTHO05D002741 1.5e-09 66.6 80 50.0
BraA02t08157Z Brassica rapa HOM05D002645 ORTHO05D002741 1.5e-09 66.6 80 50.0
CAN.G1473.3 Capsicum annuum HOM05D002645 ORTHO05D002741 1.5e-09 66.6 107 44.9
CsaV3_1G015590 Cucumis sativus L. HOM05D002645 ORTHO05D002741 1.5e-09 66.6 84 47.6
A02p31570 Brassica napus HOM05D002645 ORTHO05D002741 1.9e-09 66.2 81 49.4
Peaxi162Scf00827g00412 Petunia axillaris HOM05D002645 ORTHO05D002741 2.5e-09 65.9 88 47.7
AUR62012858 Chenopodium quinoa HOM05D002645 ORTHO05D002741 3.3e-09 65.5 60 56.7
AUR62021807 Chenopodium quinoa HOM05D002645 ORTHO05D002741 3.3e-09 65.5 60 56.7
Hund21127 Selenicereus undatus HOM05D002645 ORTHO05D002741 3.3e-09 65.5 87 41.4
Psat0s473g0040 Pisum sativum HOM05D002645 ORTHO05D002741 4.2e-09 65.1 96 50.0
Nn1g07770 Nelumbo nucifera HOM05D002645 ORTHO05D002741 5.5e-09 64.7 44 61.4
Solyc04g015120.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 5.5e-09 64.7 86 48.8
AL8G10210 Arabidopsis lyrata HOM05D002645 ORTHO05D002741 7.2e-09 64.3 84 46.4
AT5G47740 Arabidopsis thaliana HOM05D002645 ORTHO05D002741 7.2e-09 64.3 84 45.2
CARHR173580 Cardamine hirsuta HOM05D002645 ORTHO05D002741 9.5e-09 63.9 84 45.2
CDE10G1277 Ceratophyllum demersum HOM05D002645 ORTHO05D002741 9.5e-09 63.9 119 36.1
Sc17g0008020 Simmondsia chinensis HOM05D002645 ORTHO05D002741 9.5e-09 63.9 116 43.1
Eucgr.E03844 Eucalyptus grandis HOM05D002645 ORTHO05D002741 1.2e-08 63.5 120 41.7
Rhsim13G0139800 Rhododendron simsii HOM05D002645 ORTHO05D002741 1.2e-08 63.5 101 45.5
Psat0s3230g0040 Pisum sativum HOM05D002645 ORTHO05D002741 1.6e-08 63.2 40 67.5
PGSC0003DMG400019746 Solanum tuberosum HOM05D002645 ORTHO05D002741 1.6e-08 63.2 104 44.2
BcaC06g34227 Brassica carinata HOM05D002645 ORTHO05D002741 2.1e-08 62.8 85 47.1
C07p31380 Brassica napus HOM05D002645 ORTHO05D002741 2.1e-08 62.8 85 47.1
BolC7t43680H Brassica oleracea HOM05D002645 ORTHO05D002741 2.1e-08 62.8 85 47.1
CDE10G0794 Ceratophyllum demersum HOM05D002645 ORTHO05D002741 2.1e-08 62.8 88 44.3
A06p44820 Brassica napus HOM05D002645 ORTHO05D002741 2.8e-08 62.4 86 46.5
BraA06t27354Z Brassica rapa HOM05D002645 ORTHO05D002741 2.8e-08 62.4 86 46.5
Carub.0008s0004 Capsella rubella HOM05D002645 ORTHO05D002741 2.8e-08 62.4 84 42.9
Medtr4g134140 Medicago truncatula HOM05D002645 ORTHO05D002741 2.8e-08 62.4 87 48.3
Peaxi162Scf00811g00031 Petunia axillaris HOM05D002645 ORTHO05D002741 2.8e-08 62.4 108 42.6
Sp2g12440 Schrenkiella parvula HOM05D002645 ORTHO05D002741 2.8e-08 62.4 66 48.5
THA.LOC104806741 Tarenaya hassleriana HOM05D002645 ORTHO05D002741 2.8e-08 62.4 65 53.8
Cfa000052 Carpinus fangiana HOM05D002645 ORTHO05D002741 3.6e-08 62.0 73 49.3
HPP92_015786 Vanilla planifolia HOM05D002645 ORTHO05D002741 3.6e-08 62.0 60 56.7
Actinidia02281 Actinidia chinensis HOM05D002645 ORTHO05D002741 4.7e-08 61.6 45 64.4
arahy.Tifrunner.gnm1.ann1.P3E3V7 Arachis hypogaea HOM05D002645 ORTHO05D002741 4.7e-08 61.6 41 70.7
MBI15_g31884_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 4.7e-08 61.6 112 35.7
arahy.Tifrunner.gnm1.ann1.QD9R4Y Arachis hypogaea HOM05D002645 ORTHO05D002741 6.1e-08 61.2 64 50.0
Nitab4.5_0006294g0050 Nicotiana tabacum HOM05D002645 ORTHO05D002741 6.1e-08 61.2 101 43.6
Ca_20988_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 8.0e-08 60.8 67 46.3
Lj4g0023840 Lotus japonicus HOM05D002645 ORTHO05D002741 8.0e-08 60.8 102 47.1
CANSAT56G4022 Cannabis sativa HOM05D002645 ORTHO05D002741 1.0e-07 60.5 72 47.2
Glyma.15G121000 Glycine max HOM05D002645 ORTHO05D002741 1.0e-07 60.5 87 42.5
VMungo0540G1084 Vigna mungo HOM05D002645 ORTHO05D002741 1.0e-07 60.5 93 40.9
Lj2g0018534 Lotus japonicus HOM05D002645 ORTHO05D002741 1.4e-07 60.1 94 46.8
unitig_26.g10044 Utricularia gibba HOM05D002645 ORTHO05D002741 1.4e-07 60.1 87 40.2
CAN.G1263.3 Capsicum annuum HOM05D002645 ORTHO05D002741 2.3e-07 59.3 102 45.1
FAN25G2183 Fragaria x ananassa HOM05D002645 ORTHO05D002741 2.3e-07 59.3 74 48.6
VMungo1215G1310 Vigna mungo HOM05D000032 ORTHO05D003727 2.3e-07 59.3 92 40.2
arahy.Tifrunner.gnm1.ann1.ZTBZ6L Arachis hypogaea HOM05D002645 ORTHO05D002741 3.0e-07 58.9 41 68.3
VMungo1215G2924 Vigna mungo HOM05D002645 ORTHO05D002741 3.0e-07 58.9 89 40.4
Ca_20987_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 4.0e-07 58.5 127 35.4
FvH4_3g00270 Fragaria vesca HOM05D002645 ORTHO05D002741 5.2e-07 58.2 84 44.0
FAN21G0857 Fragaria x ananassa HOM05D002645 ORTHO05D002741 5.2e-07 58.2 84 44.0
Psat0s3230g0080 Pisum sativum HOM05D002645 ORTHO05D002741 5.2e-07 58.2 124 40.3
arahy.Tifrunner.gnm1.ann1.28F7LT Arachis hypogaea HOM05D002645 ORTHO05D002741 6.8e-07 57.8 62 48.4
PGSC0003DMG400026054 Solanum tuberosum HOM05D002645 ORTHO05D002741 6.8e-07 57.8 138 36.2
Glyma.09G015200 Glycine max HOM05D002645 ORTHO05D002741 8.9e-07 57.4 41 61.0
SalBow1G0992 Salvia bowleyana HOM05D002645 ORTHO05D002741 8.9e-07 57.4 96 45.8
Lalb_Chr07g0176911 Lupinus albus HOM05D002645 ORTHO05D002741 1.2e-06 57.0 61 47.5
SalBow1G2284 Salvia bowleyana HOM05D002645 ORTHO05D002741 1.5e-06 56.6 96 44.8
Glyma.17G005000 Glycine max HOM05D002645 ORTHO05D002741 2.0e-06 56.2 84 41.7
RcHm_v2.0_Chr5g0000401 Rosa chinensis HOM05D002645 ORTHO05D002741 2.0e-06 56.2 78 43.6
Aqoxy3G01205 Aquilegia oxysepala HOM05D002645 ORTHO05D002741 3.4e-06 55.5 86 38.4
ATR0824G127 Amborella trichopoda HOM05D002645 ORTHO05D002741 4.4e-06 55.1 83 38.6
Glyma.17G004900 Glycine max HOM05D002645 ORTHO05D002741 5.7e-06 54.7 74 45.9
Eucgr.E03842 Eucalyptus grandis HOM05D002645 ORTHO05D002741 7.5e-06 54.3 62 53.2
TPR.G5943 Trifolium pratense HOM05D002645 ORTHO05D002741 7.5e-06 54.3 117 35.9


User provided reference genes

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