Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 5.5e-215 750.7 391 100.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 7.5e-172 607.4 385 86.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.5e-116 423.7 396 66.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.1e-102 376.7 384 60.4
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.4e-101 374.0 386 61.9
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 4.5e-100 369.0 385 60.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 5.0e-99 365.5 389 59.6
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 9.3e-98 361.3 387 58.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.2e-97 360.9 379 60.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.6e-97 360.5 386 59.3
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.7e-97 359.8 392 59.4
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 7.9e-97 358.2 376 59.6
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.2e-94 350.1 389 58.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 8.2e-94 348.2 393 58.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.1e-93 345.9 388 56.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 9.0e-93 344.7 388 57.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-90 337.0 347 61.4
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 7.2e-90 335.1 386 55.7
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-89 333.6 389 55.0
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.7e-89 333.2 391 56.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.6e-89 332.8 393 54.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.1e-89 332.0 410 53.2
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.9e-89 331.6 323 61.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.3e-88 330.1 384 55.5
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.7e-86 323.9 389 55.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.3e-83 314.3 414 51.7
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.7e-83 313.9 392 54.1
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-82 311.2 387 53.5
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-82 310.8 410 52.7
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.5e-82 310.1 412 52.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.2e-82 309.3 393 53.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 9.4e-82 308.1 354 57.9
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.7e-81 306.6 389 52.2
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 4.7e-81 305.8 386 53.9
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.0e-80 303.1 399 52.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 3.9e-80 302.8 408 52.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 5.1e-80 302.4 407 52.1
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.0e-79 300.4 395 50.9
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.7e-79 298.9 387 52.5
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.7e-78 297.4 399 50.4
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.9e-75 286.6 384 51.3
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.5e-75 285.4 384 50.5
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 6.5e-75 285.4 384 50.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.5e-74 283.5 392 50.0
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.2e-73 281.2 347 53.0
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-73 280.8 347 53.6
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.6e-73 280.8 384 52.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.3e-72 276.9 347 53.0
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 5.2e-72 275.8 381 51.2
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 6.7e-72 275.4 390 50.8
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.6e-71 273.5 397 49.9
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 5.7e-71 272.3 428 47.4
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.7e-71 272.3 396 48.0
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.2e-70 270.4 402 48.5
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.8e-70 270.0 429 47.8
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.8e-70 269.2 397 47.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.8e-69 267.3 396 48.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.9e-68 262.3 335 54.3
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.9e-67 260.0 311 54.7
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 5.0e-67 259.2 400 47.5
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.5e-66 256.9 390 46.9
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.2e-66 256.5 394 47.5
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 4.2e-66 256.1 406 47.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-65 253.4 349 51.6
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.7e-65 253.4 404 47.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.1e-65 252.3 326 53.4
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.0e-64 251.5 274 60.2
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.0e-64 249.6 390 49.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.2e-63 248.1 364 48.6
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.5e-63 247.7 380 46.6
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 3.4e-63 246.5 390 48.7
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.4e-63 246.1 384 45.6
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.7e-62 244.2 380 45.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.2e-62 243.8 384 47.4
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.8e-62 242.7 395 45.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 8.3e-62 241.9 393 45.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.4e-61 241.1 385 46.8
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 7.0e-61 238.8 379 47.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-60 236.9 364 48.6
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.2e-59 233.8 383 45.7
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.2e-59 233.8 393 43.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.2e-59 233.8 389 45.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.8e-59 233.0 388 44.8
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 5.0e-59 232.6 388 45.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 8.5e-59 231.9 378 49.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 8.0e-57 225.3 372 45.2
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 8.0e-57 225.3 396 44.2
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.0e-56 224.9 393 45.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 8.8e-56 221.9 397 45.8
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.6e-55 220.3 305 52.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.4e-55 219.5 331 47.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 4.4e-55 219.5 382 42.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.7e-54 217.6 396 43.2
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.2e-52 211.5 384 40.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.9e-52 209.1 392 42.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.7e-52 208.8 354 46.9
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.0e-51 208.4 372 46.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.1e-50 204.9 348 44.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-49 200.7 257 56.0
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.9e-46 189.5 365 39.5
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 4.9e-46 189.5 342 42.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.3e-46 188.7 384 41.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.2e-45 186.8 371 43.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 9.2e-45 185.3 334 46.4
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.6e-44 184.5 344 44.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.7e-44 183.7 372 43.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 5.9e-44 182.6 369 43.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 5.9e-44 182.6 369 43.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 5.9e-44 182.6 369 43.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-43 181.4 369 43.4
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.0e-43 180.3 378 42.9
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 5.0e-43 179.5 178 59.0
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.6e-43 179.1 281 48.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.6e-43 179.1 281 48.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.6e-43 178.7 351 41.0
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.9e-42 177.6 330 44.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 9.5e-42 175.3 394 40.6
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.0e-40 171.8 297 44.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.8e-39 166.0 374 38.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.1e-37 161.8 344 39.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 7.8e-36 155.6 335 37.9
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 3.0e-35 153.7 296 42.2
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-33 147.5 123 63.4
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.1e-33 147.5 183 52.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 4.4e-31 139.8 116 69.0
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.2e-29 133.7 185 49.7
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.0e-27 128.6 393 34.4
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 5.1e-27 126.3 126 63.5
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.5e-26 124.8 393 33.6
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 8.1e-25 119.0 180 48.9
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 6.8e-24 115.9 239 42.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-18 96.7 188 42.6
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-18 96.7 188 42.6
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-17 93.6 180 41.7
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-16 91.7 338 32.2
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-14 82.4 166 40.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-14 82.4 166 40.4
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-13 82.0 166 40.4
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.4e-13 81.6 103 53.4
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-13 80.5 166 39.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.3e-13 79.0 166 39.2
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-12 78.6 166 39.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-12 76.6 167 40.1
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.3e-10 70.5 182 36.8
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 9.6e-10 68.9 203 34.5
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.2e-07 62.0 252 30.6
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 9.9e-07 58.9 155 34.8
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 2.9e-06 57.4 53 66.0


User provided reference genes

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