Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 5.3e-295 1016.9 505 100.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.2e-253 878.6 505 86.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.5e-246 854.7 505 84.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-244 849.7 504 83.3
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-244 849.7 504 83.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.3e-229 799.7 506 76.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.7e-229 799.3 507 78.7
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.5e-228 796.2 506 77.1
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 5.6e-228 794.3 506 77.1
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.6e-227 791.6 505 76.6
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.8e-226 789.3 505 75.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.0e-226 788.1 517 75.0
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.8e-225 783.5 506 76.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 3.7e-224 781.6 506 76.5
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 3.5e-222 775.0 507 75.9
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 4.6e-222 774.6 506 75.7
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.3e-221 773.1 505 74.7
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.7e-221 772.7 508 75.4
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.3e-221 772.3 507 75.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 5.1e-221 771.2 506 74.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.6e-221 770.8 508 74.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.5e-220 769.6 506 73.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.5e-220 769.6 506 74.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.5e-220 768.8 506 74.9
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.3e-220 768.5 506 74.9
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.3e-220 768.1 511 74.4
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-220 767.7 511 74.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.2e-219 766.5 511 74.4
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-219 765.0 523 73.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.7e-219 764.6 506 73.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 8.1e-219 763.8 506 74.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.4e-218 763.1 505 75.2
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.1e-218 761.9 506 74.9
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 6.8e-218 760.8 506 72.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 6.8e-218 760.8 506 74.9
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.9e-218 760.4 505 75.0
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.4e-217 758.1 506 72.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 9.9e-217 756.9 510 72.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 4.9e-216 754.6 507 72.4
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 9.2e-215 750.4 506 72.3
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 9.2e-215 750.4 512 72.9
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.2e-214 750.0 506 72.9
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.1e-211 739.2 509 71.5
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.7e-211 738.0 544 69.1
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.1e-211 737.3 510 71.4
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.1e-210 736.9 511 71.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 4.0e-210 734.9 511 71.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.8e-210 734.2 510 71.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 6.8e-210 734.2 510 71.2
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.0e-209 732.6 507 69.6
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.8e-209 731.1 511 70.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.2e-206 723.4 507 70.6
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 4.6e-206 721.5 506 70.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 2.3e-205 719.2 505 70.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 8.7e-205 717.2 507 70.2
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.1e-204 716.8 506 69.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.5e-204 715.7 510 69.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 4.3e-204 714.9 509 69.5
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 7.3e-204 714.1 509 69.5
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 9.6e-204 713.8 502 69.5
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-203 713.4 518 68.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.6e-203 713.0 505 69.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 3.6e-203 711.8 509 69.4
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 6.2e-203 711.1 508 69.7
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.4e-202 709.9 418 81.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.1e-202 708.8 471 73.0
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 4.0e-202 708.4 505 70.5
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.0e-202 708.4 473 72.5
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-201 706.8 508 69.3
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.5e-201 706.4 508 68.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.6e-201 705.7 506 68.6
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 7.6e-201 704.1 596 61.2
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 9.9e-201 703.7 506 68.8
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 9.9e-201 703.7 505 68.5
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 9.9e-201 703.7 505 68.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.1e-199 700.3 505 68.1
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 9.3e-199 697.2 507 68.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 2.1e-198 696.0 507 68.0
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.7e-198 695.7 508 68.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.5e-198 695.3 508 67.5
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 4.6e-198 694.9 505 67.3
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.9e-196 689.5 507 67.3
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.3e-196 688.7 534 64.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 5.6e-196 688.0 525 65.1
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.8e-195 684.9 507 66.7
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 6.2e-195 684.5 507 66.9
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 4.0e-194 681.8 507 66.7
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 4.0e-194 681.8 507 66.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 5.3e-194 681.4 505 67.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.0e-193 679.5 507 66.1
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 4.5e-193 678.3 507 65.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 4.5e-193 678.3 516 67.4
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.8e-192 675.2 514 65.6
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.9e-191 672.9 545 64.2
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.4e-191 672.5 531 63.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.2e-191 672.2 515 66.6
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.9e-190 667.5 505 64.8
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 7.9e-190 667.5 507 65.9
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 7.9e-190 667.5 459 70.2
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.5e-188 662.5 524 63.9
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.1e-187 659.4 505 63.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 5.8e-185 651.4 506 62.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.7e-184 649.8 456 69.3
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-183 646.7 491 67.2
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.5e-183 646.0 508 65.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.2e-183 645.2 415 73.7
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.6e-182 643.3 505 61.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.6e-179 633.3 507 61.1
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.7e-172 608.2 450 69.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 2.8e-171 605.9 585 56.4
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 6.3e-171 604.7 507 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.4e-164 581.3 513 55.9
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.4e-162 577.0 517 56.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 9.1e-162 574.3 503 54.7
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.5e-161 573.5 413 68.3
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.0e-161 573.2 502 57.8
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.3e-155 551.6 384 72.9
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.0e-149 534.3 523 56.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.1e-146 522.7 506 55.5
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.6e-102 377.5 253 66.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.4e-98 362.5 624 36.9
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.4e-92 343.2 548 40.7
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 5.8e-92 342.4 286 61.5
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.5e-84 317.8 182 76.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.9e-82 310.8 238 69.7
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 4.6e-81 306.2 381 47.8
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.4e-77 294.7 250 58.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.8e-77 294.3 221 61.1
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.1e-70 270.8 210 71.4
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.6e-68 263.8 571 32.9
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.0e-67 261.9 175 68.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.6e-65 253.1 266 48.9
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 5.5e-58 229.6 428 36.9
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 4.1e-53 213.4 508 31.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.0e-51 208.8 171 61.4
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.3e-45 186.4 383 32.9
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-42 177.6 212 50.0
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.3e-39 167.2 455 28.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.3e-38 162.9 420 27.6
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.9e-35 154.1 223 43.0
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 5.5e-26 123.2 206 41.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.8e-21 108.2 65 83.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.0e-20 104.8 65 78.5
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 3.0e-16 90.9 70 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.0e-16 90.5 134 38.8
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 7.0e-13 79.7 74 58.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-11 75.9 107 41.1
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 1.0e-11 75.9 74 58.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 3.3e-10 70.9 63 50.8
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-09 68.6 68 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.4e-07 60.5 83 48.2


User provided reference genes

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