Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 8.3e-70 266.9 136 100.0
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.5e-63 246.1 137 94.9
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.3e-27 125.9 155 59.4
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-26 123.6 145 57.9
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 8.2e-25 117.5 139 57.6
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 3.1e-24 115.5 139 56.8
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 7.6e-23 110.9 137 50.4
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 6.5e-22 107.8 136 52.2
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 8.5e-22 107.5 136 52.2
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.2e-21 105.1 138 52.2
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.2e-21 105.1 137 50.4
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 5.5e-21 104.8 141 49.6
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.2e-20 103.6 140 49.3
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.9e-20 100.9 139 49.6
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.8e-19 99.8 138 50.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 3.0e-19 99.0 136 47.8
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.9e-19 98.6 136 45.6
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 3.9e-19 98.6 136 49.3
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.1e-18 97.1 143 46.9
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.5e-18 95.9 138 45.7
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 4.3e-18 95.1 146 48.6
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.7e-18 94.0 136 47.1
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.7e-17 92.0 130 48.5
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 3.7e-17 92.0 142 48.6
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 8.2e-17 90.9 131 48.1
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 8.2e-17 90.9 131 48.1
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.8e-16 89.7 146 46.6
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 2.4e-16 89.4 136 43.4
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 3.1e-16 89.0 142 44.4
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.1e-16 89.0 132 50.0
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 4.1e-16 88.6 143 44.1
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 4.1e-16 88.6 133 44.4
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.3e-16 88.2 136 46.3
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 5.3e-16 88.2 163 47.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 5.3e-16 88.2 146 47.9
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.9e-16 87.8 131 48.1
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 9.1e-16 87.4 142 48.6
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.1e-16 87.4 138 44.2
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-15 87.0 131 48.1
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.5e-15 86.7 134 45.5
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-15 86.7 131 48.1
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-15 86.7 131 48.1
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.0e-15 86.3 138 46.4
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 2.0e-15 86.3 136 48.5
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.7e-14 83.2 145 50.3
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 3.8e-14 82.0 135 45.9
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 5.0e-14 81.6 147 48.3
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 6.5e-14 81.3 136 45.6
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 6.5e-14 81.3 137 40.9
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 8.5e-14 80.9 136 42.6
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.4e-13 80.1 140 47.1
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.5e-13 79.3 139 41.7
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.2e-13 79.0 112 40.2
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 4.2e-13 78.6 136 37.5
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 5.5e-13 78.2 136 43.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 9.4e-13 77.4 139 45.3
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 9.4e-13 77.4 137 39.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.2e-12 77.0 135 39.3
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.7e-12 75.9 134 42.5
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 2.7e-12 75.9 160 40.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.7e-12 75.9 136 39.7
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.6e-12 75.5 136 39.7
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.7e-12 75.1 138 39.1
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 7.9e-12 74.3 137 41.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 7.9e-12 74.3 148 40.5
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.4e-11 73.6 136 36.0
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 1.4e-11 73.6 137 40.1
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-11 73.2 136 36.8
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.8e-11 73.2 136 36.8
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 3.0e-11 72.4 144 42.4
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.9e-11 72.0 155 41.9
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 6.7e-11 71.2 158 39.2
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 8.8e-11 70.9 153 41.8
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 8.8e-11 70.9 145 40.0
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 8.8e-11 70.9 151 38.4
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.1e-10 70.5 136 40.4
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-10 70.1 137 40.9
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.5e-10 70.1 138 42.0
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.5e-10 70.1 142 43.7
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.6e-10 69.3 139 38.8
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 4.4e-10 68.6 123 43.1
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 4.4e-10 68.6 140 39.3
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.7e-10 68.2 138 39.1
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.4e-10 67.8 159 40.9
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.3e-09 67.0 157 43.3
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.3e-09 67.0 138 40.6
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.3e-09 67.0 150 43.3
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.3e-09 67.0 142 35.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 1.7e-09 66.6 142 39.4
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 2.2e-09 66.2 136 43.4
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-09 65.9 160 38.8
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 4.8e-09 65.1 133 42.9
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.3e-09 64.7 157 39.5
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.4e-08 63.5 146 37.0
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.4e-08 63.5 142 38.7
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 1.8e-08 63.2 155 38.7
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 1.8e-08 63.2 134 37.3
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 3.1e-08 62.4 149 38.3
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 4.1e-08 62.0 80 55.0
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 4.1e-08 62.0 157 37.6
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 4.1e-08 62.0 135 37.8
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 4.1e-08 62.0 137 35.0
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 5.3e-08 61.6 155 37.4
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 5.3e-08 61.6 142 37.3
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 9.1e-08 60.8 128 39.8
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.2e-07 60.5 131 38.2
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-07 60.1 138 37.7
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 2.6e-07 59.3 153 37.3
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 3.4e-07 58.9 91 40.7
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 5.9e-07 58.2 137 36.5
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.9e-07 58.2 142 31.7
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.7e-07 57.8 136 37.5
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.7e-07 57.8 136 37.5
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.3e-06 57.0 137 36.5
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.7e-06 56.6 133 38.3
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-06 56.6 133 38.3
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-06 56.6 133 39.1
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-06 56.6 133 38.3
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-06 56.6 133 38.3
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.2e-06 56.2 153 37.9
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 2.2e-06 56.2 44 61.4
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 2.9e-06 55.8 139 38.1
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 2.9e-06 55.8 156 35.9
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.9e-06 55.8 158 37.3
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 3.8e-06 55.5 133 37.6
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.0e-06 55.1 106 42.5
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 6.5e-06 54.7 132 38.6
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 8.5e-06 54.3 102 40.2
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 8.5e-06 54.3 138 35.5
THA.LOC104815481 Tarenaya hassleriana HOM05D010379 ORTHO05D012419 8.5e-06 54.3 143 37.8


User provided reference genes

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