Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06906 Corylus avellana HOM05D002698 ORTHO05D002903 1.3e-68 263.1 144 100.0
Cfa000116 Carpinus fangiana HOM05D002698 ORTHO05D002903 2.1e-39 166.0 106 91.5
QL10p003592 Quercus lobata HOM05D002698 ORTHO05D002903 2.2e-28 129.4 125 69.6
Glyma.15G113900 Glycine max HOM05D002698 ORTHO05D002903 5.1e-25 118.2 110 61.8
Glyma.09G009400 Glycine max HOM05D002698 ORTHO05D002903 1.1e-24 117.1 110 61.8
CiPaw.09G101400 Carya illinoinensis HOM05D002698 ORTHO05D002903 1.5e-24 116.7 97 66.0
CiPaw.10G077000 Carya illinoinensis HOM05D002698 ORTHO05D002903 1.9e-24 116.3 108 63.9
Prupe.4G012100 Prunus persica HOM05D002698 ORTHO05D002903 3.3e-24 115.5 104 60.6
FvH4_3g01090 Fragaria vesca HOM05D002698 ORTHO05D002903 4.3e-24 115.2 102 60.8
FAN25G3628 Fragaria x ananassa HOM05D002698 ORTHO05D002903 7.3e-24 114.4 102 59.8
Ca_00713_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 2.1e-23 112.8 110 60.0
arahy.Tifrunner.gnm1.ann1.38NIYD Arachis hypogaea HOM05D002698 ORTHO05D002903 1.1e-22 110.5 109 59.6
arahy.Tifrunner.gnm1.ann1.83IVCD Arachis hypogaea HOM05D002698 ORTHO05D002903 1.1e-22 110.5 109 59.6
RcHm_v2.0_Chr5g0001661 Rosa chinensis HOM05D002698 ORTHO05D002903 1.8e-22 109.8 104 59.6
Lj6g0023919 Lotus japonicus HOM05D002698 ORTHO05D002903 2.4e-22 109.4 112 61.6
Phvul.006G143900 Phaseolus vulgaris HOM05D002698 ORTHO05D002903 3.1e-22 109.0 107 58.9
VMungo0540G1252 Vigna mungo HOM05D002698 ORTHO05D002903 4.0e-22 108.6 108 58.3
TPR.G13112 Trifolium pratense HOM05D002698 ORTHO05D002903 2.0e-21 106.3 111 59.5
FAN21G0791 Fragaria x ananassa HOM05D002698 ORTHO05D002903 1.3e-20 103.6 93 59.1
Medtr2g025490 Medicago truncatula HOM05D002698 ORTHO05D002903 1.3e-20 103.6 110 59.1
Psat1g177000 Pisum sativum HOM05D002698 ORTHO05D002903 1.7e-20 103.2 111 59.5
Atru.chr1.2479 Acer truncatum HOM05D002698 ORTHO05D002903 2.9e-20 102.4 106 57.5
MD05G1356800 Malus domestica HOM05D002698 ORTHO05D002903 3.2e-19 99.0 104 53.8
Ciclev10016689m.g Citrus clementina HOM05D002698 ORTHO05D002903 5.4e-19 98.2 102 56.9
Lalb_Chr18g0056901 Lupinus albus HOM05D002698 ORTHO05D002903 9.3e-19 97.4 110 60.9
Lalb_Chr20g0119181 Lupinus albus HOM05D002698 ORTHO05D002903 1.2e-18 97.1 110 66.4
MELO3C021699.2 Cucumis melo HOM05D002698 ORTHO05D002903 2.1e-18 96.3 108 57.4
Sed0024160 Sechium edule HOM05D002698 ORTHO05D002903 7.8e-18 94.4 105 54.3
Cpa.g.sc152.68 Carica papaya HOM05D002698 ORTHO05D002903 1.3e-17 93.6 93 57.0
Manes.16G001101 Manihot esculenta HOM05D002698 ORTHO05D002903 6.6e-17 91.3 105 52.4
CsaV3_1G018430 Cucumis sativus L. HOM05D002698 ORTHO05D002903 1.9e-16 89.7 110 53.6
Duzib192G0540 Durio zibethinus HOM05D002698 ORTHO05D002903 1.9e-16 89.7 99 55.6
MD10G1329900 Malus domestica HOM05D002698 ORTHO05D002903 2.5e-16 89.4 92 54.3
CSS0002004 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 9.6e-16 87.4 98 55.1
ClCG01G010010 Citrullus lanatus HOM05D002698 ORTHO05D002903 9.6e-16 87.4 124 50.0
Duzib235G0585 Durio zibethinus HOM05D002698 ORTHO05D002903 9.6e-16 87.4 103 53.4
TAR626G1298 Trochodendron aralioides HOM05D002698 ORTHO05D002903 9.6e-16 87.4 101 55.4
Sed0002138 Sechium edule HOM05D002698 ORTHO05D002903 2.1e-15 86.3 108 50.0
Cc09_g00960 Coffea canephora HOM05D002698 ORTHO05D002903 2.8e-15 85.9 106 49.1
Hma1.2p1_0660F.1_g197560 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 4.8e-15 85.1 96 58.3
PGR004G0123 Punica granatum HOM05D002698 ORTHO05D002903 4.8e-15 85.1 84 54.8
Gohir.A10G009700 Gossypium hirsutum HOM05D002698 ORTHO05D002903 8.1e-15 84.3 84 56.0
Gorai.011G010300 Gossypium raimondii HOM05D002698 ORTHO05D002903 1.1e-14 84.0 84 56.0
Thecc.06G231800 Theobroma cacao HOM05D002698 ORTHO05D002903 1.4e-14 83.6 101 59.4
Potri.004G001500 Populus trichocarpa HOM05D002698 ORTHO05D002903 1.8e-14 83.2 87 54.0
MSTRG.7172 Avicennia marina HOM05D002698 ORTHO05D002903 5.3e-14 81.6 99 51.5
SalBow1G0917 Salvia bowleyana HOM05D002698 ORTHO05D002903 6.9e-14 81.3 106 48.1
TWI63G0242 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 9.0e-14 80.9 104 50.0
Gohir.D10G009450 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.2e-13 80.5 80 55.0
Duzib160G0780 Durio zibethinus HOM05D002698 ORTHO05D002903 1.5e-13 80.1 102 59.8
Gohir.A06G206000 Gossypium hirsutum HOM05D002698 ORTHO05D002903 3.4e-13 79.0 100 56.0
Nitab4.5_0000143g0370 Nicotiana tabacum HOM05D002698 ORTHO05D002903 7.6e-13 77.8 104 48.1
Nn1g07341 Nelumbo nucifera HOM05D002698 ORTHO05D002903 1.3e-12 77.0 100 53.0
Nitab4.5_0001198g0160 Nicotiana tabacum HOM05D002698 ORTHO05D002903 2.2e-12 76.3 104 48.1
Sabra04G0000500 Salix brachista HOM05D002698 ORTHO05D002903 2.2e-12 76.3 55 70.9
MSTRG.14616 Avicennia marina HOM05D002698 ORTHO05D002903 4.9e-12 75.1 109 46.8
THA.LOC104813516 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 4.9e-12 75.1 100 44.0
Gohir.D06G215500 Gossypium hirsutum HOM05D002698 ORTHO05D002903 6.4e-12 74.7 102 54.9
CSS0045965 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 8.4e-12 74.3 107 44.9
AUR62021875 Chenopodium quinoa HOM05D002698 ORTHO05D002903 8.4e-12 74.3 103 57.3
Potri.011G023200 Populus trichocarpa HOM05D002698 ORTHO05D002903 8.4e-12 74.3 87 50.6
Gorai.010G250800 Gossypium raimondii HOM05D002698 ORTHO05D002903 1.1e-11 73.9 102 56.9
Eucgr.E03955 Eucalyptus grandis HOM05D002698 ORTHO05D002903 1.9e-11 73.2 95 48.4
vmacro15775 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 1.9e-11 73.2 91 52.7
THA.LOC104806327 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 4.2e-11 72.0 102 41.2
DCAR_027850 Daucus carota HOM05D002698 ORTHO05D002903 5.4e-11 71.6 111 47.7
Actinidia02321 Actinidia chinensis HOM05D002698 ORTHO05D002903 7.1e-11 71.2 86 52.3
Rhsim02G0103900 Rhododendron simsii HOM05D002698 ORTHO05D002903 7.1e-11 71.2 97 50.5
SGA_v2.0_scaffold7G03756 Striga asiatica HOM05D002698 ORTHO05D002903 2.1e-10 69.7 93 49.5
MSTRG.16018 Avicennia marina HOM05D002698 ORTHO05D002903 2.7e-10 69.3 107 44.9
A01p13680 Brassica napus HOM05D002698 ORTHO05D002903 2.7e-10 69.3 97 41.2
BraA01t01313Z Brassica rapa HOM05D002698 ORTHO05D002903 2.7e-10 69.3 97 41.2
AUR62012780 Chenopodium quinoa HOM05D002698 ORTHO05D002903 2.7e-10 69.3 101 57.4
Actinidia26869 Actinidia chinensis HOM05D002698 ORTHO05D002903 3.5e-10 68.9 86 51.2
COL.COLO4_31867 Corchorus olitorius HOM05D002698 ORTHO05D002903 3.5e-10 68.9 107 52.3
TWI38G1017 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 6.0e-10 68.2 85 50.6
TAR629G1840 Trochodendron aralioides HOM05D002698 ORTHO05D002903 6.0e-10 68.2 110 43.6
Oeu049727.2 Olea europaea HOM05D002698 ORTHO05D002903 7.9e-10 67.8 78 52.6
EL10Ac8g20172 Beta vulgaris HOM05D002698 ORTHO05D002903 3.0e-09 65.9 79 51.9
Peaxi162Scf00558g00219 Petunia axillaris HOM05D002698 ORTHO05D002903 3.0e-09 65.9 88 60.2
Sabra11G0014200 Salix brachista HOM05D002698 ORTHO05D002903 3.0e-09 65.9 79 48.1
DCAR_002218 Daucus carota HOM05D002698 ORTHO05D002903 6.7e-09 64.7 88 47.7
Solyc04g014710.3 Solanum lycopersicum HOM05D002698 ORTHO05D002903 6.7e-09 64.7 86 48.8
Sopen04g006820 Solanum pennellii HOM05D002698 ORTHO05D002903 6.7e-09 64.7 86 48.8
BcaNung01695 Brassica carinata HOM05D002698 ORTHO05D002903 1.1e-08 63.9 108 39.8
Hund21155 Selenicereus undatus HOM05D002698 ORTHO05D002903 1.1e-08 63.9 105 45.7
Dinv07390 Davidia involucrata HOM05D002698 ORTHO05D002903 1.9e-08 63.2 71 53.5
PGSC0003DMG400023559 Solanum tuberosum HOM05D002698 ORTHO05D002903 1.9e-08 63.2 86 48.8
Nitab4.5_0008006g0040 Nicotiana tabacum HOM05D002698 ORTHO05D002903 2.5e-08 62.8 86 48.8
Oeu044416.1 Olea europaea HOM05D002698 ORTHO05D002903 2.5e-08 62.8 71 47.9
BcaNung02502 Brassica carinata HOM05D002698 ORTHO05D002903 5.6e-08 61.6 96 50.0
C07p51790 Brassica napus HOM05D002698 ORTHO05D002903 7.4e-08 61.2 96 49.0
CAN.G1263.13 Capsicum annuum HOM05D002698 ORTHO05D002903 7.4e-08 61.2 86 45.3
PSO210G7768 Papaver somniferum HOM05D002698 ORTHO05D002903 7.4e-08 61.2 99 38.4
CDE02G2170 Ceratophyllum demersum HOM05D002698 ORTHO05D002903 1.6e-07 60.1 98 37.8
Nitab4.5_0013359g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 2.1e-07 59.7 88 46.6
Peaxi162Scf00990g00122 Petunia axillaris HOM05D002698 ORTHO05D002903 3.7e-07 58.9 86 48.8
Oeu002757.1 Olea europaea HOM05D002698 ORTHO05D002903 4.8e-07 58.5 101 40.6
BcaC09g51141 Brassica carinata HOM05D002698 ORTHO05D002903 6.2e-07 58.2 81 43.2
C01p16560 Brassica napus HOM05D002698 ORTHO05D002903 6.2e-07 58.2 81 43.2
BolC1t01606H Brassica oleracea HOM05D002698 ORTHO05D002903 6.2e-07 58.2 81 43.2
BolC7t45681H Brassica oleracea HOM05D002698 ORTHO05D002903 1.8e-06 56.6 108 43.5
Thhalv10026905m.g Eutrema salsugineum HOM05D002698 ORTHO05D002903 1.8e-06 56.6 116 39.7
BcaNung03745 Brassica carinata HOM05D002698 ORTHO05D002903 3.1e-06 55.8 97 39.2
CARHR229230 Cardamine hirsuta HOM05D002698 ORTHO05D002903 3.1e-06 55.8 70 44.3
HPP92_015733 Vanilla planifolia HOM05D002698 ORTHO05D002903 3.1e-06 55.8 99 39.4
AT4G22320 Arabidopsis thaliana HOM05D002698 ORTHO05D002903 5.3e-06 55.1 123 43.9
BraA03t14412Z Brassica rapa HOM05D002698 ORTHO05D002903 5.3e-06 55.1 113 42.5
PSO302G0017 Papaver somniferum HOM05D002698 ORTHO05D002903 6.9e-06 54.7 99 36.4
unitig_27.g24806 Utricularia gibba HOM05D002698 ORTHO05D002903 6.9e-06 54.7 92 41.3


User provided reference genes

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