Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 5.8e-49 197.6 126 100.0
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 1.9e-20 102.8 81 95.1
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 9.0e-18 94.0 93 52.7
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 7.9e-14 80.9 79 51.9
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.6e-11 73.2 81 49.4
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 2.1e-11 72.8 80 45.0
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 2.1e-11 72.8 80 45.0
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 3.6e-11 72.0 86 47.7
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 4.8e-11 71.6 78 47.4
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 8.1e-11 70.9 81 67.9
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 8.1e-11 70.9 81 48.1
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 1.1e-10 70.5 80 43.8
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 1.8e-10 69.7 81 46.9
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 2.4e-10 69.3 80 47.5
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 4.0e-10 68.6 82 45.1
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.2e-09 67.0 77 50.6
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 1.2e-09 67.0 81 45.7
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.2e-09 67.0 81 44.4
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.2e-09 67.0 79 48.1
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.2e-09 67.0 79 48.1
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.0e-09 66.2 79 40.5
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.6e-09 65.9 79 40.5
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 2.6e-09 65.9 79 45.6
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 7.6e-09 64.3 81 45.7
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 7.6e-09 64.3 81 46.9
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 7.6e-09 64.3 77 44.2
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 9.9e-09 63.9 76 44.7
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.3e-08 63.5 81 43.2
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.7e-08 63.2 76 67.1
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.9e-08 62.4 76 43.4
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.9e-08 62.4 76 40.8
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 3.8e-08 62.0 81 44.4
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 3.8e-08 62.0 81 44.4
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.9e-08 61.6 81 45.7
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 6.4e-08 61.2 79 43.0
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 6.4e-08 61.2 80 45.0
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.1e-07 60.5 81 44.4
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.9e-07 59.7 77 44.2
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 3.2e-07 58.9 79 62.0
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 4.2e-07 58.5 77 41.6
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 4.2e-07 58.5 38 68.4
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 5.5e-07 58.2 81 40.7
Aqoxy4G01827 Aquilegia oxysepala HOM05D009550 ORTHO05D006691 7.1e-07 57.8 84 61.9
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 7.1e-07 57.8 77 41.6
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 9.3e-07 57.4 80 43.8
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 9.3e-07 57.4 78 53.8
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 1.2e-06 57.0 84 39.3
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 1.2e-06 57.0 80 46.2
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 1.2e-06 57.0 81 40.7
Nn1g07147 Nelumbo nucifera HOM05D009550 ORTHO05D006691 1.2e-06 57.0 85 64.7
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.2e-06 57.0 77 40.3
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 2.1e-06 56.2 65 38.5
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 2.1e-06 56.2 42 61.9
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 2.1e-06 56.2 40 70.0
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 2.7e-06 55.8 76 40.8
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 2.7e-06 55.8 42 59.5
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 3.5e-06 55.5 83 38.6
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 4.6e-06 55.1 42 59.5
Rhsim02G0106600 Rhododendron simsii HOM05D007037 ORTHO05D006691 4.6e-06 55.1 90 58.9
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 6.0e-06 54.7 91 40.7
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 6.0e-06 54.7 42 59.5
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 6.0e-06 54.7 42 59.5
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 7.9e-06 54.3 81 38.3


User provided reference genes

Program Settings