Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.5e-237 825.1 420 100.0
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.3e-222 776.2 420 93.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 6.3e-209 730.7 409 92.7
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.8e-182 641.7 422 78.7
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 6.0e-167 591.3 421 73.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 8.1e-164 580.9 431 71.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.0e-162 576.2 420 71.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.0e-162 576.2 436 68.1
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.4e-162 575.5 426 70.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 9.9e-162 573.9 426 70.0
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.9e-161 572.4 415 71.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.2e-160 568.9 402 73.1
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.2e-160 568.9 438 67.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.1e-160 567.8 415 71.1
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.6e-159 566.6 421 72.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.1e-159 566.2 437 68.6
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.5e-159 565.5 442 68.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 3.9e-158 562.0 435 68.3
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 3.9e-158 562.0 421 71.0
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.5e-157 559.3 433 67.4
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 5.6e-157 558.1 428 68.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 2.8e-156 555.8 428 69.2
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 6.2e-156 554.7 439 66.5
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 6.2e-156 554.7 434 68.4
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 8.1e-156 554.3 434 66.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.6e-154 549.3 434 66.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 4.4e-154 548.5 427 68.6
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 4.9e-153 545.0 445 66.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.9e-153 545.0 427 68.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.1e-152 542.0 415 69.2
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.1e-152 542.0 428 67.3
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 7.8e-151 537.7 435 66.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.0e-150 537.3 421 68.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.1e-150 535.0 397 70.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.1e-149 533.9 428 66.1
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 6.9e-147 524.6 425 65.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.3e-145 520.4 469 60.3
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.2e-145 519.6 437 64.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.9e-145 519.2 416 65.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.8e-145 518.8 399 66.2
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.4e-144 516.2 421 65.3
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 3.2e-144 515.8 438 63.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.1e-143 513.1 432 63.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-141 507.3 430 63.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.3e-141 505.8 385 67.8
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.3e-141 505.4 385 68.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.3e-141 505.4 400 66.0
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.1e-140 503.1 396 64.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 2.8e-140 502.7 415 63.6
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.8e-140 502.7 425 64.5
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.6e-140 502.3 413 63.7
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 4.8e-140 501.9 429 62.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.1e-139 499.2 421 63.4
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.5e-138 496.9 317 78.5
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.0e-138 496.5 351 70.4
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.6e-138 496.1 387 66.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 5.8e-138 495.0 406 65.8
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.9e-138 494.2 388 66.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.9e-138 494.2 388 66.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.3e-137 493.8 411 63.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.7e-137 493.4 393 64.4
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.2e-137 493.0 448 60.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.2e-137 493.0 385 66.5
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.9e-137 492.7 396 64.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 2.9e-137 492.7 317 77.6
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.1e-136 490.7 394 63.7
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.9e-136 490.0 426 61.3
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.2e-136 488.8 387 65.6
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.2e-136 488.8 395 64.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.4e-136 488.4 413 63.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.4e-136 488.4 392 64.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 7.1e-136 488.0 426 61.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 4.8e-132 475.3 452 58.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.8e-132 475.3 343 70.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 9.0e-131 471.1 433 59.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.4e-130 469.2 395 60.8
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 3.4e-130 469.2 317 73.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 7.6e-130 468.0 430 59.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 9.9e-130 467.6 399 60.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.2e-129 466.5 411 60.8
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.8e-129 465.7 373 65.7
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.1e-128 464.2 428 57.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-128 463.4 446 58.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.2e-128 462.6 357 65.8
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.6e-127 458.8 401 58.6
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.0e-126 457.6 413 60.0
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.0e-126 457.6 397 61.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.7e-126 454.9 420 59.8
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.6e-125 451.1 413 57.9
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 6.2e-124 448.4 419 57.8
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-123 447.2 388 61.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.8e-123 446.8 414 57.7
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 4.0e-123 445.7 417 57.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 4.0e-123 445.7 423 58.2
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.3e-123 445.3 419 58.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.3e-123 445.3 421 57.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 7.6e-122 441.4 427 57.1
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.0e-121 441.0 365 64.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.9e-121 438.7 421 59.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.1e-120 437.6 436 55.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.4e-120 437.2 422 57.3
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.2e-120 436.0 423 56.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 4.2e-120 435.6 421 57.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 5.5e-120 435.3 419 57.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-119 433.0 417 57.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 5.1e-118 428.7 417 57.1
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 8.7e-118 427.9 419 57.0
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.5e-117 426.4 424 56.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.2e-116 423.3 317 69.7
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.6e-114 414.8 545 45.1
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-113 414.5 394 58.6
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-113 414.1 399 56.1
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.3e-113 414.1 409 56.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.5e-113 411.8 409 57.0
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 8.5e-113 411.4 403 57.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.5e-112 408.7 292 70.9
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.6e-111 407.1 412 56.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.1e-111 406.8 396 54.0
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.9e-111 404.8 412 56.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.3e-110 403.3 383 57.2
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.0e-110 402.9 412 55.8
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 6.7e-110 401.7 408 56.1
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 6.7e-110 401.7 416 50.5
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-109 401.0 407 56.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.5e-109 400.6 320 57.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 9.7e-109 397.9 392 56.9
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.9e-106 388.7 413 54.0
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.9e-106 388.7 413 54.0
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.2e-105 386.7 317 65.3
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.9e-105 386.3 413 54.0
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.9e-105 386.3 413 54.0
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 5.0e-105 385.6 408 54.2
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 5.0e-105 385.6 407 51.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-104 384.4 413 53.5
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.9e-104 383.6 387 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 8.8e-102 374.8 343 54.5
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.0e-89 332.4 447 44.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 8.8e-86 321.6 281 60.5
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-83 314.7 203 75.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.3e-54 217.2 327 37.6
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 3.2e-51 206.8 317 39.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-50 204.9 196 56.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-48 198.4 190 55.8
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 7.3e-48 195.7 288 43.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.4e-38 164.1 278 42.4
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 4.7e-31 139.8 189 43.9
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.9e-29 132.1 107 68.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.3e-25 120.9 173 44.5
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.6e-23 113.6 110 56.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.4e-22 111.7 129 52.7
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 5.3e-22 109.8 102 56.9
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 8.7e-17 92.4 234 27.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.7e-15 87.0 53 73.6
QL04p046239 Quercus lobata HOM05D004835 ORTHO05D000004 2.8e-07 60.8 55 65.5


User provided reference genes

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