Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.7e-227 792.3 403 100.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.5e-209 731.5 409 92.7
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 7.7e-196 687.2 409 86.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.8e-181 639.4 381 84.5
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.8e-166 589.0 381 78.5
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.5e-162 575.9 390 75.6
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.6e-161 573.2 385 75.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.6e-161 572.0 395 72.7
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.7e-161 571.6 385 74.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 8.0e-161 570.9 379 76.3
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 8.8e-160 567.4 374 76.7
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 9.8e-159 563.9 361 78.4
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.3e-158 563.5 397 71.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.2e-158 562.8 374 75.9
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 6.3e-158 561.2 396 73.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.3e-158 561.2 380 77.1
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.4e-157 560.1 401 72.6
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 5.4e-157 558.1 394 72.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.2e-156 557.0 380 75.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.7e-156 554.3 392 71.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.8e-155 552.0 398 70.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 8.6e-155 550.8 387 73.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.9e-154 549.7 393 72.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.5e-154 549.3 393 71.0
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.1e-153 546.2 386 73.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 8.0e-153 544.3 393 71.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 4.0e-152 542.0 406 70.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.5e-151 540.0 386 72.5
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.3e-150 537.0 387 71.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.7e-150 536.6 374 73.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.2e-150 536.2 385 72.7
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.4e-149 532.7 394 70.1
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.6e-148 530.0 356 75.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.5e-148 528.9 387 70.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.9e-146 523.1 417 66.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 7.3e-146 521.2 399 68.2
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.1e-145 519.6 384 70.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.8e-144 516.5 375 70.1
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.3e-144 516.2 358 71.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 4.0e-144 515.4 428 63.6
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 6.8e-144 514.6 396 68.2
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 7.5e-143 511.1 380 69.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.4e-142 508.1 391 67.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 4.1e-141 505.4 390 67.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 9.2e-141 504.2 348 72.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.7e-140 502.7 342 73.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.7e-140 502.7 344 73.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.7e-140 502.7 359 70.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.5e-140 502.3 389 66.8
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.7e-139 500.0 357 68.9
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 2.3e-139 499.6 376 67.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.9e-139 498.8 374 67.9
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.6e-139 497.7 384 68.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.5e-138 496.9 354 69.2
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.5e-138 496.1 349 71.6
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.5e-138 496.1 349 71.6
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 7.3e-138 494.6 346 72.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.5e-138 494.2 380 67.4
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.2e-137 493.8 357 68.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.1e-137 493.0 347 70.6
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 3.6e-137 492.3 365 70.4
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 6.2e-137 491.5 276 86.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.4e-136 490.3 353 69.4
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 5.2e-136 488.4 370 67.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.2e-136 488.4 374 67.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 5.2e-136 488.4 348 70.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.8e-136 488.0 407 63.6
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.2e-135 487.3 355 68.2
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-135 487.3 276 85.1
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 5.8e-135 485.0 385 64.9
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.3e-134 483.8 354 68.4
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.2e-134 483.0 385 64.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 6.6e-131 471.5 411 62.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-130 470.7 386 64.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.5e-130 470.3 302 75.8
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.5e-130 467.6 354 65.3
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.6e-129 466.8 360 64.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.6e-129 465.7 392 62.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.4e-128 463.8 276 80.1
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.3e-128 463.0 387 61.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.2e-128 461.8 405 62.2
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 6.8e-128 461.5 370 64.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.2e-127 460.7 332 70.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 3.4e-127 459.1 363 62.3
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 5.8e-127 458.4 352 66.5
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 5.8e-127 458.4 368 64.9
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 3.8e-126 455.7 345 67.5
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 4.9e-126 455.3 377 64.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-125 453.8 356 65.2
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.9e-125 453.4 370 62.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 7.1e-125 451.4 392 60.5
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.1e-125 451.4 376 62.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.6e-124 448.7 380 61.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 6.0e-124 448.4 376 62.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 6.0e-124 448.4 374 61.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 6.6e-123 444.9 384 63.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.6e-123 444.9 384 61.5
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.3e-122 442.6 378 62.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 5.6e-122 441.8 384 59.9
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 9.6e-122 441.0 373 61.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.6e-121 440.3 382 61.5
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.6e-121 439.1 378 61.4
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 4.7e-121 438.7 376 62.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 8.1e-121 438.0 364 64.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-120 436.4 374 61.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.4e-119 432.2 374 61.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.6e-119 431.4 376 61.4
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-118 429.9 381 61.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 7.8e-116 421.4 276 76.8
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-115 421.0 354 63.0
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 6.6e-115 418.3 372 61.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.6e-115 418.3 347 62.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.6e-115 418.3 361 62.0
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 8.7e-115 417.9 363 61.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 8.7e-115 417.9 352 60.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.5e-114 417.2 370 60.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 4.3e-114 415.6 372 60.5
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 7.3e-114 414.8 368 60.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-113 413.7 372 60.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.6e-113 413.7 504 47.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.6e-113 412.5 368 60.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-113 412.1 367 60.5
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.4e-112 409.8 355 58.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.3e-112 408.7 292 70.9
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 9.0e-112 407.9 376 54.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 7.6e-111 404.8 281 63.3
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-109 399.8 373 58.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-109 399.8 373 58.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-108 397.1 373 58.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.6e-108 397.1 373 58.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.1e-108 396.7 368 58.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.6e-108 395.6 373 57.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.1e-107 392.1 348 61.5
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.6e-105 387.1 367 54.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.9e-104 381.7 276 71.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 7.9e-100 368.2 339 54.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.3e-91 340.1 407 46.7
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.6e-87 326.6 237 67.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.0e-83 314.7 203 75.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.0e-59 233.4 297 41.4
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 5.3e-56 222.6 287 43.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-55 220.7 166 66.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.9e-53 214.2 160 66.2
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.0e-50 204.1 249 47.8
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 7.3e-37 159.1 237 45.1
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 6.0e-31 139.4 189 43.9
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.5e-29 132.1 107 68.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.2e-25 120.9 173 44.5
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.5e-23 113.6 110 56.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.3e-22 111.7 129 52.7
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 4.3e-21 106.7 61 78.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 5.8e-18 96.3 282 27.0
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.5e-15 87.0 53 73.6
QL04p046239 Quercus lobata HOM05D004835 ORTHO05D000004 2.7e-07 60.8 55 65.5


User provided reference genes

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