Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 6.9e-105 384.0 200 100.0
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.4e-104 381.7 200 99.5
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 8.4e-95 350.5 201 92.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.0e-71 273.9 187 78.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.7e-71 273.1 200 77.5
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 5.0e-63 245.0 206 69.4
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.2e-61 240.4 205 65.9
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.1e-61 239.6 213 66.2
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.0e-60 235.3 210 64.8
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.6e-59 232.6 210 66.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 5.7e-59 231.5 205 62.9
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 7.0e-57 224.6 205 63.4
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.2e-56 223.8 205 63.4
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.7e-55 219.9 211 63.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-54 216.1 204 63.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.2e-54 215.7 193 64.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.5e-54 214.9 212 60.8
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.2e-54 214.5 204 63.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.4e-54 214.2 204 63.2
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.0e-52 210.7 205 61.0
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.0e-52 210.7 205 61.0
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-52 209.9 198 61.6
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 3.0e-52 209.1 204 61.3
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.0e-52 209.1 196 61.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.0e-52 208.8 190 64.2
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.0e-51 206.5 196 61.7
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-51 206.5 198 61.1
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 3.4e-51 205.7 200 62.0
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.2e-50 203.0 206 58.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.1e-49 198.7 203 60.1
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.4e-49 198.4 186 60.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.5e-48 195.3 213 57.7
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 5.9e-48 194.9 195 57.9
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.7e-47 193.4 204 56.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.7e-47 193.4 205 58.5
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.5e-46 190.3 186 59.1
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.9e-46 189.9 193 60.6
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 9.5e-46 187.6 184 60.9
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 4.7e-45 185.3 203 56.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 6.1e-45 184.9 214 55.6
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.0e-43 179.9 190 57.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.4e-43 179.1 193 58.5
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 5.7e-43 178.3 204 54.4
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.5e-43 177.9 212 56.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 9.8e-43 177.6 215 55.3
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.4e-41 173.7 210 53.3
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 7.0e-41 171.4 200 55.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 7.0e-41 171.4 195 59.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 2.0e-40 169.9 189 57.1
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 5.9e-40 168.3 179 56.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.7e-39 166.8 193 52.8
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 5.0e-39 165.2 208 53.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.9e-38 163.3 195 53.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-38 162.9 188 54.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.3e-38 162.2 203 55.2
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.6e-37 160.2 185 54.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.6e-37 159.1 180 54.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.6e-37 159.1 190 52.6
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 8.0e-37 157.9 208 50.0
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.0e-36 157.5 193 54.4
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.0e-36 156.0 209 52.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 6.8e-36 154.8 224 51.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 8.9e-36 154.5 190 53.7
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.2e-35 154.1 162 54.9
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.0e-35 153.3 171 56.1
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.0e-35 153.3 195 51.3
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.0e-35 153.3 187 54.5
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.4e-35 152.5 206 52.4
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.4e-35 152.5 206 52.4
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 5.8e-35 151.8 198 52.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.5e-35 151.4 206 54.4
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-34 150.6 214 49.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.7e-34 150.2 189 49.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.7e-34 150.2 140 62.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.9e-34 149.4 177 55.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.7e-34 149.1 194 52.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.9e-34 148.7 192 50.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.4e-34 148.3 212 50.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 8.3e-34 147.9 208 50.0
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.4e-33 147.1 205 48.8
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.4e-33 146.4 202 53.5
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 7.0e-33 144.8 214 48.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.0e-33 144.8 209 50.7
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-32 144.1 187 51.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.6e-32 142.1 212 49.5
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 6.6e-31 138.3 171 53.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.5e-30 137.1 207 46.4
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.9e-30 136.7 202 47.5
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 4.3e-30 135.6 197 53.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.6e-29 133.7 187 47.6
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.6e-29 133.7 189 48.7
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 4.7e-29 132.1 138 55.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 6.2e-29 131.7 215 44.7
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 8.0e-29 131.3 137 56.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.3e-28 129.8 204 48.5
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.1e-28 129.4 195 48.7
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.6e-27 126.3 187 44.9
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.4e-27 125.9 172 48.8
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.5e-27 124.8 200 47.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 7.5e-27 124.8 208 43.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.7e-26 123.6 206 47.6
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.9e-26 122.9 179 48.0
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 6.0e-24 115.2 166 48.8
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 7.8e-24 114.8 216 42.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.8e-24 114.8 182 44.0
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 6.6e-23 111.7 188 42.6
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.1e-22 110.9 186 43.0
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.1e-22 110.9 194 44.8
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 2.5e-22 109.8 218 40.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.5e-22 109.8 142 50.0
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 4.3e-22 109.0 186 42.5
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 7.3e-22 108.2 189 40.7
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 7.3e-22 108.2 178 46.1
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.6e-21 107.1 155 47.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 2.8e-21 106.3 189 41.8
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.8e-21 106.3 189 42.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.8e-21 106.3 168 47.0
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.6e-21 105.9 192 44.3
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 3.6e-21 105.9 177 44.1
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.1e-20 104.4 146 50.0
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.4e-20 104.0 190 43.2
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.4e-20 104.0 183 41.5
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.3e-20 103.2 189 40.7
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.3e-20 103.2 189 40.7
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 8.9e-20 101.3 186 39.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-19 100.9 178 42.1
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-19 100.9 178 42.1
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-19 100.1 176 43.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.6e-19 99.8 178 41.6
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-18 97.1 183 44.8
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.2e-18 96.7 178 42.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-17 94.0 182 39.6
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.9e-17 93.6 205 41.0
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.1e-17 92.4 186 39.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 4.1e-17 92.4 186 42.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 4.1e-17 92.4 169 40.8
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 5.4e-17 92.0 87 60.9
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 7.1e-17 91.7 181 40.3
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-16 90.9 188 41.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.5e-16 89.4 193 37.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-15 87.8 193 35.8
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.7e-15 87.0 199 37.2
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.7e-15 87.0 198 38.4
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 8.6e-15 84.7 190 41.6
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.1e-13 80.1 127 51.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.2e-13 78.6 86 55.8
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 8.1e-13 78.2 170 37.6
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.4e-12 76.6 108 41.7
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 6.8e-12 75.1 233 32.6
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 8.9e-12 74.7 185 37.8
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 1.2e-11 74.3 180 33.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-11 73.2 58 67.2
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.9e-10 68.9 172 34.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 4.1e-09 65.9 124 41.1
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 7.1e-09 65.1 169 36.7
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.2e-09 64.7 62 58.1
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 9.2e-09 64.7 67 53.7
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.2e-08 64.3 59 52.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 4.6e-08 62.4 211 31.3
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 1.3e-07 60.8 151 33.8
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 6.6e-07 58.5 105 41.9
Zm00001eb369720 Zea mays HOM05D033938 ORTHO05D004706 1.9e-06 57.0 52 55.8
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 9.6e-06 54.7 70 42.9


User provided reference genes

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