Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 8.2e-255 883.2 453 100.0
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 4.8e-231 804.3 427 96.0
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 6.2e-162 574.7 440 71.1
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 7.9e-157 557.8 434 68.2
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 5.1e-156 555.1 434 68.2
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 6.0e-149 531.6 439 64.7
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.4e-134 483.8 466 59.4
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 3.2e-134 482.6 439 60.6
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 5.7e-131 471.9 443 60.5
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 2.8e-130 469.5 443 58.9
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 3.7e-130 469.2 443 59.6
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 4.8e-130 468.8 441 59.2
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 4.8e-130 468.8 445 59.3
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 3.4e-128 462.6 466 57.3
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 5.5e-126 455.3 445 57.5
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 4.7e-125 452.2 445 60.0
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 4.7e-125 452.2 441 56.9
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 6.1e-125 451.8 445 57.3
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 7.4e-123 444.9 452 55.8
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.8e-122 442.2 442 57.2
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 4.8e-122 442.2 442 57.2
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 2.4e-121 439.9 447 55.9
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.1e-121 439.1 442 55.4
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 5.3e-121 438.7 436 56.7
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.2e-120 437.6 440 56.8
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.2e-120 437.6 447 55.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 1.6e-120 437.2 434 58.3
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.6e-120 437.2 445 56.4
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.6e-120 436.4 442 57.5
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.0e-119 434.5 440 57.0
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.0e-119 434.5 469 54.8
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.8e-119 432.6 444 56.8
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.9e-118 430.3 439 56.3
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 2.5e-118 429.9 440 56.1
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 1.6e-117 427.2 441 56.2
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 1.0e-116 424.5 452 55.8
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.8e-116 423.7 442 55.4
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 2.3e-116 423.3 443 55.8
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 3.3e-115 419.5 444 53.6
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 7.0e-113 411.8 445 54.2
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 2.9e-111 406.4 439 53.5
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.5e-110 403.3 442 53.2
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 8.0e-109 398.3 440 53.6
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 8.8e-108 394.8 436 54.6
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 2.0e-107 393.7 434 53.5
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.7e-106 390.6 456 51.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 4.8e-106 389.0 451 51.7
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 4.1e-105 386.0 457 51.0
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.2e-104 384.4 451 51.2
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.7e-104 383.3 458 51.1
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 3.5e-104 382.9 451 50.8
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.5e-102 377.5 432 51.9
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 2.5e-102 376.7 433 52.2
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.3e-100 370.2 462 48.5
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 6.8e-100 368.6 438 52.1
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 9.8e-99 364.8 456 49.8
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.7e-98 364.0 457 49.5
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.7e-98 364.0 457 49.5
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.3e-95 354.4 450 51.1
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 3.8e-95 352.8 443 48.3
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 2.5e-94 350.1 369 55.0
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 3.3e-94 349.7 431 49.7
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 2.8e-93 346.7 455 47.7
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 1.3e-90 337.8 433 49.9
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.7e-90 337.4 505 45.0
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.9e-90 336.7 453 47.7
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.4e-89 333.6 453 47.0
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 2.0e-88 330.5 434 47.9
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 4.6e-88 329.3 411 50.4
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 6.0e-88 328.9 439 47.6
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.3e-87 327.8 456 46.5
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 3.9e-87 326.2 455 46.8
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 1.5e-86 324.3 464 44.4
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.2e-85 321.2 432 46.5
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.0e-83 313.9 438 47.7
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.2e-82 310.5 456 44.5
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.9e-82 309.3 464 43.5
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 4.1e-81 306.2 456 45.8
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 7.0e-81 305.4 456 46.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 9.2e-81 305.1 452 46.0
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 4.6e-80 302.8 475 43.6
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 3.0e-79 300.1 429 44.8
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 7.3e-78 295.4 449 44.5
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 2.6e-75 287.0 459 44.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 9.9e-75 285.0 433 45.7
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 4.1e-73 279.6 463 42.5
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 3.0e-71 273.5 447 46.1
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.9e-71 273.1 433 44.6
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.5e-70 271.2 434 44.7
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.9e-70 270.8 430 44.0
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.6e-69 267.7 426 42.7
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.8e-68 264.2 449 42.1
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 4.0e-68 263.1 430 41.6
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 6.8e-68 262.3 433 43.2
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 2.6e-67 260.4 433 41.6
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 9.9e-67 258.5 430 41.6
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.3e-66 258.1 443 42.0
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 3.8e-66 256.5 445 42.2
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 8.4e-66 255.4 430 42.1
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.4e-65 254.6 430 42.3
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.4e-65 254.6 430 42.3
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 1.9e-65 254.2 447 40.5
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 9.2e-65 251.9 431 42.0
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 4.6e-64 249.6 477 41.5
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.0e-63 248.4 429 40.8
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.0e-63 248.4 431 42.0
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 5.1e-63 246.1 430 42.1
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 2.5e-62 243.8 440 40.7
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 2.1e-61 240.7 433 39.3
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.7e-61 239.6 433 41.6
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 1.8e-60 237.7 278 52.9
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 3.1e-60 236.9 135 82.2
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.2e-59 235.0 454 40.7
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.2e-59 235.0 443 40.2
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.9e-57 227.6 437 40.0
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 4.2e-57 226.5 432 41.0
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.2e-57 226.5 439 40.1
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.1e-56 224.2 295 47.1
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.6e-56 223.0 349 41.3
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.1e-53 214.2 162 67.3
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.5e-46 190.7 243 50.2
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 9.0e-44 182.2 452 37.2
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 6.0e-40 169.5 355 37.2
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 1.0e-39 168.7 510 34.7
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 6.1e-32 142.9 436 34.9
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 3.1e-28 130.6 163 48.5
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 3.8e-26 123.6 117 58.1
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.1e-25 122.1 436 33.0
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 1.0e-23 115.5 426 30.3
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 5.0e-18 96.7 107 54.2
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 6.5e-18 96.3 279 33.3
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 3.2e-17 94.0 133 44.4
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 3.0e-15 87.4 178 40.4
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 1.3e-10 72.0 121 39.7


User provided reference genes

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