Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.5e-225 784.3 392 100.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.8e-157 557.8 392 76.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.5e-143 512.7 388 68.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 4.4e-140 501.9 388 69.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.9e-139 499.2 388 66.8
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.6e-137 493.4 388 67.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 3.5e-137 492.3 388 65.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 2.1e-134 483.0 388 66.8
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.6e-134 482.3 388 66.0
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 8.1e-134 481.1 388 65.5
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-133 480.3 388 65.5
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.8e-133 479.9 388 65.5
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.8e-133 479.9 388 66.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.8e-133 479.9 388 63.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.4e-133 479.6 388 65.2
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.1e-133 479.2 388 63.7
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.1e-133 479.2 388 65.2
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 3.1e-133 479.2 388 66.0
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.0e-133 478.8 388 65.7
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.9e-133 478.0 388 63.4
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.2e-132 477.2 388 63.7
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 7.6e-132 474.6 388 62.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 7.6e-132 474.6 388 65.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.6e-132 474.6 388 62.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 9.9e-132 474.2 388 64.4
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 9.9e-132 474.2 388 64.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.3e-131 473.8 388 64.7
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.3e-131 473.8 388 64.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.7e-131 473.4 388 65.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.7e-131 473.4 388 65.7
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 2.2e-131 473.0 388 64.9
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.9e-131 472.6 388 66.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.9e-131 472.6 390 62.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 8.4e-131 471.1 388 62.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.1e-130 470.7 388 62.9
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.4e-130 470.3 388 65.5
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.2e-130 468.8 388 63.4
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 7.1e-130 468.0 388 64.2
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.2e-129 467.2 388 62.4
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.2e-129 467.2 388 61.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.2e-129 467.2 388 61.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.6e-129 466.8 388 63.1
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.1e-129 466.5 388 61.9
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.7e-129 466.1 388 62.1
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 3.5e-129 465.7 388 64.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 3.5e-129 465.7 388 61.9
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.0e-129 464.9 388 62.1
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 6.0e-129 464.9 388 61.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.0e-129 464.9 388 61.9
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.0e-129 464.9 388 63.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.0e-129 464.9 388 63.4
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.0e-128 464.2 388 62.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.3e-128 463.8 388 61.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.3e-128 463.0 388 61.6
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.9e-128 462.2 388 63.1
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.1e-128 461.8 388 61.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 5.1e-128 461.8 388 60.8
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 8.7e-128 461.1 388 61.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 8.7e-128 461.1 388 63.1
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.7e-128 461.1 388 62.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.5e-127 460.3 388 63.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.5e-127 460.3 388 62.9
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.9e-127 459.9 388 62.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.9e-127 459.9 388 63.7
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.9e-127 459.9 388 62.4
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.5e-127 459.5 388 63.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.5e-127 459.5 388 61.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 5.6e-127 458.4 388 62.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 7.4e-127 458.0 388 63.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.4e-127 458.0 388 62.9
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 9.6e-127 457.6 388 61.9
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.3e-126 457.2 390 60.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.8e-126 455.3 388 60.8
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 6.2e-126 454.9 388 60.8
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 8.1e-126 454.5 388 61.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 8.1e-126 454.5 390 60.0
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.1e-125 454.1 394 62.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.1e-125 452.6 388 60.8
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.1e-125 452.6 388 60.8
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.3e-125 451.8 390 60.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.3e-125 451.8 388 60.8
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 6.9e-125 451.4 390 60.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.5e-124 450.3 390 60.5
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.0e-124 449.9 390 62.6
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.6e-124 449.5 388 62.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.8e-123 445.7 391 60.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.8e-123 445.7 385 60.5
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 3.8e-123 445.7 388 59.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.9e-122 443.4 391 60.1
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.9e-122 443.4 388 60.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 3.2e-122 442.6 397 59.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.9e-121 438.0 396 60.4
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.0e-120 436.0 399 57.9
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 3.0e-120 436.0 388 58.2
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 5.1e-120 435.3 399 58.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 8.7e-120 434.5 399 57.6
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.5e-119 433.7 399 57.6
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.5e-119 433.7 388 58.8
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.9e-119 433.3 399 58.4
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.9e-119 433.3 399 57.6
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.9e-119 433.3 399 57.6
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.9e-119 433.3 399 57.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.3e-119 432.6 388 59.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 9.6e-119 431.0 399 57.4
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 3.7e-118 429.1 397 57.4
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.3e-117 425.2 389 59.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.0e-116 423.3 388 58.5
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.0e-116 423.3 388 58.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 4.5e-116 422.2 388 58.2
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 6.5e-115 418.3 388 58.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 6.1e-105 385.2 388 53.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.8e-104 383.6 391 51.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.1e-104 382.1 389 50.9
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.1e-101 374.4 389 50.6
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.1e-98 364.4 394 49.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.4e-98 364.0 388 52.1
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 3.2e-98 362.8 323 61.6
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.3e-95 352.8 223 81.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.8e-94 349.7 344 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 4.8e-94 349.0 388 48.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.1e-93 346.3 225 72.4
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.8e-88 328.2 225 74.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.2e-86 323.6 396 45.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.0e-83 314.7 202 73.3
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.4e-63 246.1 181 68.5
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.3e-56 223.8 159 69.2
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.0e-56 223.0 149 69.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 6.8e-56 222.2 248 50.8
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.2e-52 211.5 231 51.1
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 5.9e-52 209.1 237 49.4
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 6.2e-41 172.6 376 35.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.1e-37 161.8 79 92.4
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.4e-37 161.4 132 58.3
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.4e-37 160.6 79 92.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 5.4e-37 159.5 93 77.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.1e-36 157.5 127 63.0
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 3.0e-35 153.7 79 86.1
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.6e-35 152.1 79 86.1
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-33 148.3 202 46.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.1e-29 133.3 87 73.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 5.2e-24 116.3 76 72.4
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 4.4e-23 113.2 387 26.6
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 3.8e-22 110.2 393 28.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.1e-21 108.6 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.0e-19 102.1 64 75.0
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 9.9e-15 85.5 55 69.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.8e-14 83.6 65 76.9
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.2e-07 62.0 105 35.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 6.4e-06 56.2 383 24.0


User provided reference genes

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