Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 3.5e-36 154.5 79 100.0
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 4.7e-33 144.1 79 91.1
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 1.2e-23 112.8 72 83.3
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.5e-23 112.5 88 70.5
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 3.8e-22 107.8 87 64.4
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 8.4e-22 106.7 73 75.3
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 1.4e-21 105.9 87 66.7
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 1.7e-19 99.0 75 72.0
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 5.1e-19 97.4 91 64.8
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 8.7e-19 96.7 89 60.7
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.1e-18 96.3 89 62.9
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.1e-18 96.3 89 62.9
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.1e-18 96.3 89 62.9
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 1.1e-18 96.3 89 60.7
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 1.9e-18 95.5 91 59.3
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.3e-18 94.7 75 69.3
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 3.3e-18 94.7 87 64.4
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 5.6e-18 94.0 91 58.2
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 6.2e-17 90.5 81 60.5
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 4.0e-16 87.8 75 66.7
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 5.3e-16 87.4 64 78.1
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 1.2e-15 86.3 77 62.3
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 4.5e-15 84.3 75 61.3
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.8e-15 84.0 73 61.6
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.8e-15 84.0 73 61.6
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.3e-14 82.8 73 63.0
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 2.9e-14 81.6 75 57.3
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 2.9e-14 81.6 82 58.5
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 8.4e-14 80.1 81 56.8
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 9.3e-13 76.6 89 57.3
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.6e-12 75.9 75 57.3
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 1.6e-12 75.9 72 56.9
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.6e-12 75.9 75 56.0
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 2.1e-12 75.5 75 57.3
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 4.6e-12 74.3 85 49.4
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.6e-12 74.3 90 48.9
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 4.6e-12 74.3 91 50.5
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 6.0e-12 73.9 91 53.8
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 7.9e-12 73.6 90 53.3
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 7.9e-12 73.6 92 47.8
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.0e-11 73.2 72 52.8
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.0e-11 71.6 97 45.4
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 6.7e-11 70.5 97 52.6
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.1e-10 69.7 88 48.9
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.5e-10 69.3 67 56.7
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 1.5e-10 69.3 67 56.7
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 1.5e-10 69.3 73 56.2
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 1.5e-10 69.3 75 53.3
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 3.3e-10 68.2 81 51.9
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 4.3e-10 67.8 77 48.1
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 4.3e-10 67.8 73 57.5
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 7.4e-10 67.0 74 52.7
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 9.6e-10 66.6 70 57.1
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 1.3e-09 66.2 89 44.9
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.6e-09 65.9 76 50.0
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 3.7e-09 64.7 91 47.3
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 8.1e-09 63.5 90 47.8
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 1.1e-08 63.2 84 47.6
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 1.8e-08 62.4 98 48.0
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.8e-08 62.4 98 48.0
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 3.1e-08 61.6 93 47.3
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 3.1e-08 61.6 74 51.4
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 4.0e-08 61.2 77 46.8
Eucgr.E03810 Eucalyptus grandis HOM05D038013 ORTHO05D009876 1.2e-07 59.7 76 53.9
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 1.2e-07 59.7 67 52.2
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.5e-07 59.3 77 48.1
CsaV3_6G049650 Cucumis sativus L. HOM05D007836 ORTHO05D009876 2.0e-07 58.9 77 45.5
THA.LOC104812666 Tarenaya hassleriana HOM05D010797 ORTHO05D012946 2.0e-07 58.9 73 46.6
Eucgr.E03690 Eucalyptus grandis HOM05D038013 ORTHO05D009876 2.6e-07 58.5 76 55.3
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 3.4e-07 58.2 72 52.8
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 5.8e-07 57.4 73 47.9
CAN.G508.11 Capsicum annuum HOM05D000831 ORTHO05D000660 9.9e-07 56.6 71 45.1
Eucgr.E03817 Eucalyptus grandis HOM05D038013 ORTHO05D009876 9.9e-07 56.6 82 47.6
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.3e-06 56.2 72 51.4
Prupe.3G229700 Prunus persica HOM05D000831 ORTHO05D000660 1.3e-06 56.2 71 45.1
Ah.06g183460 Amaranthus hybridus HOM05D000831 ORTHO05D000660 1.7e-06 55.8 77 42.9
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 1.7e-06 55.8 71 49.3
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 2.2e-06 55.5 61 59.0
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 2.9e-06 55.1 76 46.1
Cc05_g06120 Coffea canephora HOM05D000831 ORTHO05D000660 2.9e-06 55.1 73 42.5
Gohir.D13G064750 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.9e-06 55.1 69 47.8
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 2.9e-06 55.1 72 48.6
Gorai.013G073500 Gossypium raimondii HOM05D007836 ORTHO05D009876 2.9e-06 55.1 69 47.8
Sp6g07160 Schrenkiella parvula HOM05D000831 ORTHO05D000660 2.9e-06 55.1 77 45.5
Ah.06g183450 Amaranthus hybridus HOM05D000831 ORTHO05D000660 3.8e-06 54.7 77 41.6
Cpa.g.sc12.26 Carica papaya HOM05D000831 ORTHO05D000660 3.8e-06 54.7 76 44.7
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-06 54.7 75 44.0
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-06 54.7 75 44.0
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-06 54.7 75 44.0
Glyma.13G301700 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 74 43.2
Glyma.13G301800 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 75 48.0
Gohir.A13G057150 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.8e-06 54.7 69 47.8
Gohir.D06G211966 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.8e-06 54.7 73 47.9
RcHm_v2.0_Chr2g0161481 Rosa chinensis HOM05D000831 ORTHO05D000660 3.8e-06 54.7 74 41.9
Cfa014532 Carpinus fangiana HOM05D000831 ORTHO05D000660 4.9e-06 54.3 75 44.0
RcHm_v2.0_Chr2g0161461 Rosa chinensis HOM05D000831 ORTHO05D000660 4.9e-06 54.3 74 40.5
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 6.4e-06 53.9 76 42.1
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 6.4e-06 53.9 77 41.6
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 6.4e-06 53.9 73 41.1
Glyma.12G200700 Glycine max HOM05D000831 ORTHO05D000660 6.4e-06 53.9 75 48.0
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 6.4e-06 53.9 75 44.0
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 6.4e-06 53.9 75 42.7
Prupe.3G229800 Prunus persica HOM05D000831 ORTHO05D000660 6.4e-06 53.9 75 45.3
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 8.4e-06 53.5 76 43.4
Cc00_g31440 Coffea canephora HOM05D000831 ORTHO05D000660 8.4e-06 53.5 76 46.1
MELO3C007328.2 Cucumis melo HOM05D007836 ORTHO05D009876 8.4e-06 53.5 82 41.5
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 8.4e-06 53.5 75 44.0


User provided reference genes

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