Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06540 Corylus avellana HOM05D007183 ORTHO05D008829 1.2e-216 756.1 352 100.0
Cfa000386 Carpinus fangiana HOM05D007183 ORTHO05D008829 5.7e-147 524.6 357 74.2
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 2.9e-114 416.0 375 57.6
Potri.011G046100 Populus trichocarpa HOM05D007183 ORTHO05D008829 1.3e-111 407.1 376 55.9
Potri.004G037400 Populus trichocarpa HOM05D007183 ORTHO05D008829 2.5e-110 402.9 376 55.3
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 2.5e-110 402.9 377 56.0
TWI38G0385 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 2.5e-110 402.9 372 55.6
Prupe.4G040300 Prunus persica HOM05D007183 ORTHO05D008829 1.7e-106 390.2 376 56.1
Glyma.13G243900 Glycine max HOM05D007183 ORTHO05D008829 2.1e-104 383.3 379 54.1
Ciclev10017704m.g Citrus clementina HOM05D007183 ORTHO05D008829 3.5e-104 382.5 374 54.3
MD10G1300400 Malus domestica HOM05D007183 ORTHO05D008829 1.3e-103 380.6 376 54.3
Manes.13G149600 Manihot esculenta HOM05D007183 ORTHO05D008829 1.3e-103 380.6 356 55.6
Phvul.006G189500 Phaseolus vulgaris HOM05D007183 ORTHO05D008829 8.7e-103 377.9 376 54.0
GSVIVG01006947001 Vitis vinifera HOM05D007183 ORTHO05D008829 1.5e-102 377.1 372 52.7
Medtr2g012790 Medicago truncatula HOM05D007183 ORTHO05D008829 1.9e-102 376.7 376 52.1
Psat1g207000 Pisum sativum HOM05D007183 ORTHO05D008829 3.3e-102 375.9 374 52.1
MD05G1322500 Malus domestica HOM05D007183 ORTHO05D008829 1.3e-101 374.0 377 53.8
Ca_00299_v3 Cicer arietinum L. HOM05D007183 ORTHO05D008829 2.8e-101 372.9 376 52.4
VMungo0540G0277 Vigna mungo HOM05D007183 ORTHO05D008829 2.8e-101 372.9 376 52.7
Lj6g0020427 Lotus japonicus HOM05D007183 ORTHO05D008829 4.0e-100 369.0 375 53.9
TAR629G0430 Trochodendron aralioides HOM05D007183 ORTHO05D008829 9.0e-100 367.9 371 52.8
Duzib235G0436 Durio zibethinus HOM05D007183 ORTHO05D008829 9.9e-99 364.4 376 51.9
Dinv03840 Davidia involucrata HOM05D007183 ORTHO05D008829 1.3e-98 364.0 359 52.4
Thecc.02G174600 Theobroma cacao HOM05D007183 ORTHO05D008829 4.9e-98 362.1 373 51.2
RcHm_v2.0_Chr5g0007471 Rosa chinensis HOM05D007183 ORTHO05D008829 3.2e-97 359.4 379 51.2
Manes.16G023400 Manihot esculenta HOM05D007183 ORTHO05D008829 9.3e-97 357.8 375 52.0
Gohir.A10G022800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.6e-96 357.1 374 51.1
TPR.G36730 Trifolium pratense HOM05D007183 ORTHO05D008829 1.6e-96 357.1 386 50.8
GSVIVG01030561001 Vitis vinifera HOM05D007183 ORTHO05D008829 2.1e-96 356.7 372 51.9
PGR004G0270 Punica granatum HOM05D007183 ORTHO05D008829 4.6e-96 355.5 377 52.0
FvH4_3g27971 Fragaria vesca HOM05D007183 ORTHO05D008829 1.3e-95 354.0 379 50.7
Gohir.D10G023600 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.8e-95 353.6 374 51.1
Gorai.009G171300 Gossypium raimondii HOM05D007183 ORTHO05D008829 1.9e-94 350.1 377 51.2
Gorai.011G024700 Gossypium raimondii HOM05D007183 ORTHO05D008829 1.9e-94 350.1 374 50.3
PGR042G2243 Punica granatum HOM05D007183 ORTHO05D008829 1.9e-94 350.1 377 50.1
CiPaw.09G053400 Carya illinoinensis HOM05D007183 ORTHO05D008829 5.6e-94 348.6 363 52.9
Gohir.D05G166200 Gossypium hirsutum HOM05D007183 ORTHO05D008829 6.2e-93 345.1 377 50.4
COL.COLO4_35412 Corchorus olitorius HOM05D007183 ORTHO05D008829 1.1e-92 344.4 328 53.4
arahy.Tifrunner.gnm1.ann1.B6W742 Arachis hypogaea HOM05D007183 ORTHO05D008829 3.1e-92 342.8 377 49.3
Gohir.D02G181900 Gossypium hirsutum HOM05D007183 ORTHO05D008829 3.1e-92 342.8 360 50.3
Gorai.005G204400 Gossypium raimondii HOM05D007183 ORTHO05D008829 3.1e-92 342.8 360 50.3
TPR.G36795 Trifolium pratense HOM05D007183 ORTHO05D008829 2.6e-91 339.7 374 48.9
Hma1.2p1_0191F.1_g083390 Hydrangea macrophylla HOM05D007183 ORTHO05D008829 2.2e-90 336.7 358 51.1
PGSC0003DMG400045796 Solanum tuberosum HOM05D007183 ORTHO05D008829 7.1e-89 331.6 379 49.6
arahy.Tifrunner.gnm1.ann1.R2A86L Arachis hypogaea HOM05D007183 ORTHO05D008829 7.9e-88 328.2 373 48.5
arahy.Tifrunner.gnm1.ann1.CVYZ1N Arachis hypogaea HOM05D007183 ORTHO05D008829 2.3e-87 326.6 373 48.0
Aqoxy1G02644 Aquilegia oxysepala HOM05D007183 ORTHO05D008829 5.1e-87 325.5 381 48.0
Gohir.A05G163250 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.9e-86 323.6 369 48.5
Nitab4.5_0007319g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 9.6e-86 321.2 379 48.0
Sopen02g023560 Solanum pennellii HOM05D007183 ORTHO05D008829 1.6e-85 320.5 380 48.2
Cc05_g06690 Coffea canephora HOM05D007183 ORTHO05D008829 3.7e-85 319.3 357 46.8
arahy.Tifrunner.gnm1.ann1.EK8XNT Arachis hypogaea HOM05D007183 ORTHO05D008829 1.8e-84 317.0 364 48.1
PSO675G2267 Papaver somniferum HOM05D007183 ORTHO05D008829 5.3e-84 315.5 373 47.7
Haze_13111 Corylus avellana HOM05D007183 ORTHO05D008829 2.6e-83 313.2 357 47.3
CANSAT35G0251 Cannabis sativa HOM05D007183 ORTHO05D008829 3.4e-83 312.8 372 48.7
Glyma.15G069800 Glycine max HOM05D007183 ORTHO05D008829 3.4e-83 312.8 269 60.6
Solyc02g078710.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 5.9e-83 312.0 380 47.1
ATR0693G416 Amborella trichopoda HOM05D007183 ORTHO05D008829 1.4e-81 307.4 353 46.7
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 3.2e-81 306.2 371 44.5
Eucgr.D00687 Eucalyptus grandis HOM05D007183 ORTHO05D008829 7.2e-81 305.1 393 44.5
PSO541G4014 Papaver somniferum HOM05D007183 ORTHO05D008829 1.6e-80 303.9 377 46.2
CsaV3_7G004260 Cucumis sativus L. HOM05D007183 ORTHO05D008829 2.1e-80 303.5 371 44.5
Nitab4.5_0001820g0090 Nicotiana tabacum HOM05D007183 ORTHO05D008829 2.3e-79 300.1 365 45.8
HanXRQChr16g0517841 Helianthus annuus HOM05D007183 ORTHO05D008829 5.1e-79 298.9 376 46.5
Nitab4.5_0001871g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 8.7e-79 298.1 374 43.3
Peaxi162Scf00007g00283 Petunia axillaris HOM05D007183 ORTHO05D008829 2.2e-77 293.5 368 43.8
GSVIVG01006336001 Vitis vinifera HOM05D007183 ORTHO05D008829 3.7e-77 292.7 298 52.3
Sed0021459 Sechium edule HOM05D007183 ORTHO05D008829 2.4e-76 290.0 352 45.2
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 3.1e-76 289.7 316 48.4
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 3.1e-76 289.7 372 44.1
Lj2P283T62 Lonicera japonica HOM05D007183 ORTHO05D008829 6.9e-76 288.5 269 56.9
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 1.0e-74 284.6 365 44.1
Nitab4.5_0002370g0040 Nicotiana tabacum HOM05D007183 ORTHO05D008829 1.3e-74 284.3 365 43.3
Cpa.g.sc34.121 Carica papaya HOM05D007183 ORTHO05D008829 1.1e-73 281.2 271 54.6
Actinidia09880 Actinidia chinensis HOM05D007183 ORTHO05D008829 3.2e-73 279.6 350 44.9
Dinv40521 Davidia involucrata HOM05D007183 ORTHO05D008829 3.2e-73 279.6 369 44.2
Solyc10g008530.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 7.2e-73 278.5 340 45.9
Solyc07g054570.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 1.6e-72 277.3 376 42.3
Eucgr.E03363 Eucalyptus grandis HOM05D007183 ORTHO05D008829 1.4e-71 274.2 369 43.9
Oeu038241.1 Olea europaea HOM05D007183 ORTHO05D008829 1.1e-70 271.2 373 41.8
Actinidia39436 Actinidia chinensis HOM05D007183 ORTHO05D008829 1.7e-69 267.3 371 42.3
COL.COLO4_31536 Corchorus olitorius HOM05D007183 ORTHO05D008829 1.1e-68 264.6 305 48.9
Migut.M01164 Erythranthe guttata HOM05D007183 ORTHO05D008829 2.2e-66 256.9 362 42.3
MELO3C018752.2 Cucumis melo HOM05D007183 ORTHO05D008829 1.4e-65 254.2 298 47.0
MBI02_g37921_MAGBIO Magnolia biondii HOM05D007183 ORTHO05D008829 1.2e-64 251.1 291 47.1
ECA234G1429 Erigeron canadensis HOM05D007183 ORTHO05D000476 7.9e-64 248.4 370 41.1
Migut.H01046 Erythranthe guttata HOM05D007183 ORTHO05D008829 7.9e-64 248.4 344 39.5
PGSC0003DMG400042494 Solanum tuberosum HOM05D007183 ORTHO05D008829 1.5e-62 244.2 274 49.3
SEGI_07341 Sequoiadendron giganteum HOM05D007183 ORTHO05D008829 7.7e-59 231.9 333 39.6
Zm00001eb258250 Zea mays HOM05D007183 ORTHO05D008829 1.2e-56 224.6 401 39.4
CAN.G996.14 Capsicum annuum HOM05D007183 ORTHO05D008829 2.1e-56 223.8 299 42.5
Eucgr.L02005 Eucalyptus grandis HOM05D007183 ORTHO05D008829 3.6e-56 223.0 302 44.0
CAN.G168.28 Capsicum annuum HOM05D007183 ORTHO05D008829 5.7e-54 215.7 266 45.9
Solyc08g068470.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 4.1e-52 209.5 302 41.7
Cc00_g11490 Coffea canephora HOM05D007183 ORTHO05D008829 1.8e-47 194.1 275 42.2
DCAR_021231 Daucus carota HOM05D007183 ORTHO05D008829 1.8e-44 184.1 158 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2587 Anthoceros agrestis HOM05D006800 ORTHO05D008478 7.2e-41 172.2 347 33.7
AagrBONN_evm.TU.Sc2ySwM_117.3060 Anthoceros agrestis HOM05D007183 ORTHO05D008829 7.2e-41 172.2 346 31.8
SMO358G0266 Selaginella moellendorffii HOM05D007183 ORTHO05D008829 2.6e-38 163.7 330 31.2
Lj8A115T58 Lonicera japonica HOM05D007183 ORTHO05D008829 2.8e-37 160.2 309 36.2
Eucgr.D00692 Eucalyptus grandis HOM05D007183 ORTHO05D008829 4.9e-37 159.5 342 33.3
Peaxi162Scf00812g00041 Petunia axillaris HOM05D007183 ORTHO05D008829 4.9e-29 132.9 180 41.7
Peaxi162Scf00608g00919 Petunia axillaris HOM05D007183 ORTHO05D008829 4.1e-28 129.8 189 39.2
Actinidia01436 Actinidia chinensis HOM05D007183 ORTHO05D008829 1.8e-23 114.4 130 48.5
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis HOM05D000667 ORTHO05D003095 9.8e-14 82.0 209 30.1
Pp3c22_21630 Physcomitrium patens HOM05D000667 ORTHO05D003843 2.2e-13 80.9 231 29.4
SMO343G0007 Selaginella moellendorffii HOM05D000667 ORTHO05D008829 8.3e-13 79.0 148 31.8
Aqoxy5G02870 Aquilegia oxysepala HOM05D000667 ORTHO05D003095 2.1e-11 74.3 314 23.9
Oeu058749.1 Olea europaea HOM05D007183 ORTHO05D008829 3.5e-11 73.6 61 55.7
Pp3c9_7690 Physcomitrium patens HOM05D001337 ORTHO05D001281 3.5e-11 73.6 230 25.7
Pp3c18_4130 Physcomitrium patens HOM05D000614 ORTHO05D003843 6.0e-11 72.8 181 30.4
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 8.6e-10 68.9 209 24.4
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 1.1e-09 68.6 187 26.2
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 1.1e-09 68.6 188 25.5
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 1.5e-09 68.2 188 25.0
Sabra10G0003900 Salix brachista HOM05D000667 ORTHO05D003095 1.5e-09 68.2 267 24.7
Prupe.1G209000 Prunus persica HOM05D000667 ORTHO05D003095 2.5e-09 67.4 188 27.1
MD13G1136500 Malus domestica HOM05D003852 ORTHO05D003095 3.3e-09 67.0 125 32.8
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 9.5e-09 65.5 189 28.0
Medtr6g023805 Medicago truncatula HOM05D000614 ORTHO05D000463 9.5e-09 65.5 201 24.9
Potri.010G004500 Populus trichocarpa HOM05D000667 ORTHO05D003095 1.2e-08 65.1 265 24.9
SEGI_25494 Sequoiadendron giganteum HOM05D001337 ORTHO05D001281 1.2e-08 65.1 200 29.0
Oeu025742.1 Olea europaea HOM05D003852 ORTHO05D003095 1.6e-08 64.7 126 32.5
FAN07G0487 Fragaria x ananassa HOM05D000667 ORTHO05D003095 2.8e-08 63.9 146 30.1
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 6.2e-08 62.8 137 33.6
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 8.1e-08 62.4 152 28.3
QL06p014826 Quercus lobata HOM05D000667 ORTHO05D003095 1.1e-07 62.0 188 28.2
CAN.G1492.12 Capsicum annuum HOM05D003852 ORTHO05D003095 1.4e-07 61.6 126 30.2
Glyma.05G077700 Glycine max HOM05D000614 ORTHO05D000463 1.4e-07 61.6 185 27.0
Sabra19G0114400 Salix brachista HOM05D007183 ORTHO05D008829 1.4e-07 61.6 63 52.4
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 1.8e-07 61.2 188 25.0
Lsat_1_v5_gn_4_107720 Lactuca sativa HOM05D000614 ORTHO05D000463 1.8e-07 61.2 242 22.7
Nn6g34111 Nelumbo nucifera HOM05D003852 ORTHO05D003095 1.8e-07 61.2 126 30.2
Rhsim06G0086400 Rhododendron simsii HOM05D003569 ORTHO05D004178 1.8e-07 61.2 180 25.6
Gohir.A06G039200 Gossypium hirsutum HOM05D003569 ORTHO05D004178 2.3e-07 60.8 200 24.5
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 3.1e-07 60.5 125 30.4
Manes.12G040400 Manihot esculenta HOM05D000667 ORTHO05D003095 3.1e-07 60.5 201 24.4
Nn1g02365 Nelumbo nucifera HOM05D003852 ORTHO05D003095 3.1e-07 60.5 130 30.8
Nitab4.5_0005696g0010 Nicotiana tabacum HOM05D003852 ORTHO05D003095 4.0e-07 60.1 128 28.9
TPR.G28881 Trifolium pratense HOM05D000614 ORTHO05D000463 5.2e-07 59.7 186 25.3
Aqoxy2G03420 Aquilegia oxysepala HOM05D003852 ORTHO05D003095 6.8e-07 59.3 126 31.7
Gohir.D13G168200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 6.8e-07 59.3 188 24.5
Gorai.013G193900 Gossypium raimondii HOM05D000667 ORTHO05D003095 6.8e-07 59.3 188 24.5
Manes.02G156800 Manihot esculenta HOM05D003569 ORTHO05D004178 8.9e-07 58.9 265 22.3
Phvul.009G027300 Phaseolus vulgaris HOM05D003569 ORTHO05D004178 8.9e-07 58.9 224 25.0
Migut.D00321 Erythranthe guttata HOM05D003852 ORTHO05D003095 1.2e-06 58.5 126 29.4
Prupe.3G305200 Prunus persica HOM05D000614 ORTHO05D000463 2.0e-06 57.8 161 25.5
PGR119G0720 Punica granatum HOM05D001337 ORTHO05D001281 2.0e-06 57.8 168 29.2
VMungo1309G0008 Vigna mungo HOM05D003569 ORTHO05D004178 2.0e-06 57.8 224 25.0
Duzib093G1202 Durio zibethinus HOM05D003569 ORTHO05D004178 2.6e-06 57.4 180 25.6
PSO210G2391 Papaver somniferum HOM05D003852 ORTHO05D003095 3.4e-06 57.0 126 29.4
PSO761G0265 Papaver somniferum HOM05D003852 ORTHO05D003095 3.4e-06 57.0 126 29.4
Potri.002G091900 Populus trichocarpa HOM05D003569 ORTHO05D004178 4.4e-06 56.6 172 27.3
Actinidia30742 Actinidia chinensis HOM05D003569 ORTHO05D004178 7.6e-06 55.8 176 25.0
Cc07_g00750 Coffea canephora HOM05D000614 ORTHO05D000463 9.9e-06 55.5 162 23.5
Mapoly0141s0015 Marchantia polymorpha HOM05D001337 ORTHO05D008829 9.9e-06 55.5 211 22.7


User provided reference genes

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