Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06539 Corylus avellana HOM05D007185 ORTHO05D009016 1.0e-50 203.0 96 100.0
Cfa000387 Carpinus fangiana HOM05D007185 ORTHO05D009016 2.9e-45 184.9 96 93.8
CiPaw.09G053500 Carya illinoinensis HOM05D007185 ORTHO05D009016 3.9e-37 157.9 96 82.3
CiPaw.10G045100 Carya illinoinensis HOM05D007185 ORTHO05D009016 2.5e-36 155.2 96 78.1
Prupe.4G040400 Prunus persica HOM05D007185 ORTHO05D009016 1.1e-28 129.8 99 64.6
Manes.17G041400 Manihot esculenta HOM05D007185 ORTHO05D009016 2.5e-28 128.6 94 61.7
Lj6g0018466 Lotus japonicus HOM05D007185 ORTHO05D009016 4.7e-27 124.4 97 61.9
Manes.16G023500 Manihot esculenta HOM05D007185 ORTHO05D009016 2.3e-26 122.1 94 58.5
Psat1g206960 Pisum sativum HOM05D007185 ORTHO05D009016 3.1e-26 121.7 99 61.6
MD05G1322400 Malus domestica HOM05D007185 ORTHO05D009016 6.8e-26 120.6 100 62.0
Thecc.06G194500 Theobroma cacao HOM05D007185 ORTHO05D009016 2.6e-25 118.6 94 59.6
Glyma.15G069900 Glycine max HOM05D007185 ORTHO05D009016 9.8e-25 116.7 96 62.5
Ca_00300_v3 Cicer arietinum L. HOM05D007185 ORTHO05D009016 1.3e-24 116.3 95 60.0
Phvul.006G189400 Phaseolus vulgaris HOM05D007185 ORTHO05D009016 2.2e-24 115.5 98 63.3
TPR.G36776 Trifolium pratense HOM05D007185 ORTHO05D009016 2.2e-24 115.5 99 60.6
arahy.Tifrunner.gnm1.ann1.5HQW77 Arachis hypogaea HOM05D007185 ORTHO05D009016 3.7e-24 114.8 101 60.4
arahy.Tifrunner.gnm1.ann1.D3DKTB Arachis hypogaea HOM05D007185 ORTHO05D009016 8.3e-24 113.6 101 59.4
Glyma.13G243800 Glycine max HOM05D007185 ORTHO05D009016 1.4e-23 112.8 96 59.4
Ciclev10017305m.g Citrus clementina HOM05D007185 ORTHO05D009016 1.9e-23 112.5 96 56.2
Potri.004G037500 Populus trichocarpa HOM05D007185 ORTHO05D009016 2.4e-23 112.1 94 58.5
RcHm_v2.0_Chr5g0007481 Rosa chinensis HOM05D007185 ORTHO05D009016 2.4e-23 112.1 97 59.8
Medtr2g012800 Medicago truncatula HOM05D007185 ORTHO05D009016 1.2e-22 109.8 109 50.5
FvH4_6g14200 Fragaria vesca HOM05D007185 ORTHO05D009016 3.5e-22 108.2 96 57.3
FAN05G3455 Fragaria x ananassa HOM05D007185 ORTHO05D009016 3.5e-22 108.2 96 57.3
FAN14G1513 Fragaria x ananassa HOM05D007185 ORTHO05D009016 3.5e-22 108.2 96 57.3
Lalb_Chr15g0089951 Lupinus albus HOM05D007185 ORTHO05D009016 6.0e-22 107.5 101 56.4
Atru.chr10.1968 Acer truncatum HOM05D007185 ORTHO05D009016 1.3e-21 106.3 101 52.5
ClCG01G022750 Citrullus lanatus HOM05D007185 ORTHO05D009016 1.3e-21 106.3 96 56.2
COL.COLO4_31534 Corchorus olitorius HOM05D007185 ORTHO05D009016 1.3e-21 106.3 96 57.3
MELO3C002569.2 Cucumis melo HOM05D007185 ORTHO05D009016 1.3e-21 106.3 91 57.1
FAN09G3112 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.7e-21 105.9 96 57.3
Oeu053961.1 Olea europaea HOM05D007185 ORTHO05D009016 3.0e-21 105.1 92 57.6
CsaV3_1G011920 Cucumis sativus L. HOM05D007185 ORTHO05D009016 8.6e-21 103.6 91 54.9
Lalb_Chr18g0059811 Lupinus albus HOM05D007185 ORTHO05D009016 1.5e-20 102.8 94 57.4
Gohir.D10G023700 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.5e-20 102.1 92 53.3
Gorai.011G024800 Gossypium raimondii HOM05D007185 ORTHO05D009016 2.5e-20 102.1 92 53.3
Actinidia05600 Actinidia chinensis HOM05D007185 ORTHO05D009016 4.3e-20 101.3 93 55.9
ClCG03G005660 Citrullus lanatus HOM05D007185 ORTHO05D009016 5.6e-20 100.9 91 53.8
MELO3C007306.2 Cucumis melo HOM05D007185 ORTHO05D009016 5.6e-20 100.9 96 54.2
Potri.011G046112 Populus trichocarpa HOM05D007185 ORTHO05D009016 7.3e-20 100.5 92 54.3
Sabra04G0022700 Salix brachista HOM05D007185 ORTHO05D009016 7.3e-20 100.5 94 53.2
Gohir.A05G163200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 9.5e-20 100.1 93 54.8
FAN21G1120 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.6e-19 99.4 93 58.1
FAN25G2721 Fragaria x ananassa HOM05D007185 ORTHO05D009016 1.6e-19 99.4 93 58.1
Lalb_Chr20g0122101 Lupinus albus HOM05D007185 ORTHO05D009016 1.6e-19 99.4 107 53.3
FAN16G0756 Fragaria x ananassa HOM05D007185 ORTHO05D009016 4.7e-19 97.8 93 57.0
Gohir.D05G166000 Gossypium hirsutum HOM05D007185 ORTHO05D009016 6.2e-19 97.4 93 54.8
Gorai.009G171200 Gossypium raimondii HOM05D007185 ORTHO05D009016 6.2e-19 97.4 93 54.8
FvH4_3g04560 Fragaria vesca HOM05D007185 ORTHO05D009016 4.0e-18 94.7 93 55.9
FAN11G2592 Fragaria x ananassa HOM05D007185 ORTHO05D009016 4.0e-18 94.7 93 55.9
Gohir.A10G022900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 4.0e-18 94.7 92 51.1
Nn1g03963 Nelumbo nucifera HOM05D007185 ORTHO05D009016 1.2e-17 93.2 96 50.0
Sabra11G0031900 Salix brachista HOM05D007185 ORTHO05D009016 1.5e-17 92.8 90 50.0
Sed0006501 Sechium edule HOM05D007185 ORTHO05D009016 2.0e-17 92.4 59 69.5
HanXRQChr09g0263951 Helianthus annuus HOM05D007185 ORTHO05D009016 5.8e-17 90.9 109 48.6
Sed0016146 Sechium edule HOM05D007185 ORTHO05D009016 5.8e-17 90.9 94 52.1
Aqoxy4G01278 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 7.6e-17 90.5 92 47.8
Hma1.2p1_0835F.1_g225880 Hydrangea macrophylla HOM05D007185 ORTHO05D009016 1.3e-16 89.7 63 69.8
Cpa.g.sc27.90 Carica papaya HOM05D007185 ORTHO05D009016 1.7e-16 89.4 92 50.0
Sed0025622 Sechium edule HOM05D007185 ORTHO05D009016 2.9e-16 88.6 85 56.5
Gohir.1Z049398 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.9e-15 85.9 61 65.6
Gohir.D09G071200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.9e-15 85.9 61 65.6
Gorai.006G086100 Gossypium raimondii HOM05D007185 ORTHO05D009016 1.9e-15 85.9 61 65.6
Gohir.A09G071400 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.4e-15 85.5 56 69.6
Aqoxy1G01214 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 2.1e-14 82.4 94 42.6
MBI18_g13206_MAGBIO Magnolia biondii HOM05D007185 ORTHO05D009016 4.6e-14 81.3 82 52.4
Sc17g0006400 Simmondsia chinensis HOM05D007185 ORTHO05D009016 1.7e-13 79.3 105 41.0
EL10Ac8g20292 Beta vulgaris HOM05D007185 ORTHO05D009016 2.3e-13 79.0 62 62.9
ATR0693G421 Amborella trichopoda HOM05D007185 ORTHO05D009016 5.1e-13 77.8 54 61.1
Migut.H01502 Erythranthe guttata HOM05D007185 ORTHO05D009016 6.6e-13 77.4 97 46.4
Lsat_1_v5_gn_7_20060 Lactuca sativa HOM05D007185 ORTHO05D009016 8.6e-13 77.0 106 47.2
Rhsim13G0175900 Rhododendron simsii HOM05D007185 ORTHO05D009016 2.5e-12 75.5 77 55.8
Sopen03g002590 Solanum pennellii HOM05D007185 ORTHO05D009016 1.2e-11 73.2 89 53.9
PGSC0003DMG400005083 Solanum tuberosum HOM05D007185 ORTHO05D009016 3.6e-11 71.6 54 70.4
SGA_v2.0_scaffold22G09753 Striga asiatica HOM05D007185 ORTHO05D009016 1.8e-10 69.3 79 51.9
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.8e-10 69.3 86 44.2
unitig_21.g20222 Utricularia gibba HOM05D007185 ORTHO05D009016 1.8e-10 69.3 88 37.5
PSO210G6717 Papaver somniferum HOM05D007185 ORTHO05D009016 5.2e-10 67.8 80 50.0
unitig_744.g24533 Utricularia gibba HOM05D007185 ORTHO05D009016 1.5e-09 66.2 87 39.1
unitig_26.g9366 Utricularia gibba HOM05D007185 ORTHO05D009016 2.0e-09 65.9 61 54.1
TAR629G0868 Trochodendron aralioides HOM05D007185 ORTHO05D009016 3.8e-08 61.6 45 57.8
Cpa.g.c35461 Carica papaya HOM05D007185 ORTHO05D009016 8.4e-08 60.5 45 55.6
THA.LOC104819117 Tarenaya hassleriana HOM05D011034 ORTHO05D013144 8.4e-08 60.5 97 42.3
Manes.04G161900 Manihot esculenta HOM05D007185 ORTHO05D009016 1.1e-07 60.1 44 56.8
Nn3g18559 Nelumbo nucifera HOM05D007185 ORTHO05D009016 1.1e-07 60.1 43 60.5
Potri.007G000801 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.9e-07 59.3 44 61.4
Eucgr.E03362 Eucalyptus grandis HOM05D007185 ORTHO05D009016 2.4e-07 58.9 108 38.9
vmacro03831 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 2.4e-07 58.9 34 85.3
Lj4g0016899 Lotus japonicus HOM05D007185 ORTHO05D009016 7.1e-07 57.4 41 63.4
COL.COLO4_33132 Corchorus olitorius HOM05D007185 ORTHO05D009016 2.1e-06 55.8 45 57.8
DCAR_008059 Daucus carota HOM05D007185 ORTHO05D009016 2.1e-06 55.8 40 70.0
Migut.M01165 Erythranthe guttata HOM05D007185 ORTHO05D009016 2.7e-06 55.5 65 44.6
Ciclev10033499m.g Citrus clementina HOM05D007185 ORTHO05D009016 3.5e-06 55.1 44 59.1
Gorai.008G147600 Gossypium raimondii HOM05D007185 ORTHO05D009016 3.5e-06 55.1 44 56.8
AL1G22100 Arabidopsis lyrata HOM05D011034 ORTHO05D013144 4.6e-06 54.7 58 55.2
Thecc.02G153300 Theobroma cacao HOM05D007185 ORTHO05D009016 4.6e-06 54.7 44 56.8
Gohir.A12G132900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 6.0e-06 54.3 44 54.5
QL01p000564 Quercus lobata HOM05D007185 ORTHO05D009016 7.8e-06 53.9 45 57.8


User provided reference genes

Program Settings