Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 3.6e-299 1030.8 512 100.0
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 4.3e-220 768.1 416 93.0
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 1.2e-217 760.0 445 84.9
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 4.5e-209 731.5 444 82.0
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 6.1e-198 694.5 445 78.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 2.6e-196 689.1 445 76.9
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 1.1e-194 683.7 446 76.7
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 7.7e-193 677.6 449 74.6
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 2.2e-192 676.0 445 75.7
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 2.2e-192 676.0 441 76.9
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 2.9e-192 675.6 451 76.7
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.5e-192 674.5 444 74.5
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 8.5e-192 674.1 444 74.1
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.9e-191 672.9 447 74.7
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.9e-191 672.9 450 74.9
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 2.5e-191 672.5 445 75.5
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 4.2e-191 671.8 441 76.4
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 7.2e-191 671.0 449 75.5
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.6e-190 669.8 446 74.9
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.7e-190 669.1 444 73.9
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 3.6e-190 668.7 444 75.9
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 6.1e-190 667.9 456 72.1
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 8.0e-190 667.5 445 74.2
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 3.0e-189 665.6 447 73.6
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-188 663.3 446 73.3
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.5e-188 663.3 438 75.3
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.5e-188 663.3 493 69.2
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 4.4e-188 661.8 447 73.4
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.4e-188 661.8 444 75.2
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.7e-187 659.8 451 73.8
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 2.2e-187 659.4 446 72.6
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 4.1e-186 655.2 447 74.0
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 7.0e-186 654.4 449 73.7
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 1.3e-184 650.2 442 75.6
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 1.7e-184 649.8 440 75.2
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 2.9e-184 649.0 439 75.6
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 3.2e-183 645.6 446 72.0
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.2e-182 643.7 439 74.5
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 2.1e-182 642.9 443 73.8
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 1.4e-181 640.2 443 72.9
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 2.3e-181 639.4 443 72.9
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.3e-181 639.4 446 71.5
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 6.8e-181 637.9 442 74.2
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 8.8e-181 637.5 445 73.3
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 8.8e-181 637.5 445 72.1
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 3.4e-180 635.6 441 73.2
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.4e-180 635.2 446 70.9
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.3e-179 633.6 446 70.9
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.7e-179 633.3 439 73.6
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 8.3e-179 630.9 442 74.0
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 1.4e-178 630.2 440 73.6
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 7.0e-178 627.9 445 72.1
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.6e-177 626.7 446 71.7
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 3.5e-177 625.5 442 72.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 5.9e-177 624.8 446 68.8
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.3e-176 623.6 444 71.4
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.3e-176 623.6 450 69.6
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 1.3e-176 623.6 453 69.5
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 5.0e-176 621.7 449 70.4
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.9e-175 619.8 440 71.4
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 2.5e-175 619.4 446 68.2
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 2.1e-174 616.3 511 64.4
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 8.0e-174 614.4 440 69.5
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 2.6e-172 609.4 446 67.3
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 1.8e-170 603.2 447 68.5
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 1.8e-170 603.2 446 69.1
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 2.4e-170 602.8 442 69.2
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 2.4e-170 602.8 449 67.9
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 7.0e-170 601.3 446 69.3
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 7.8e-169 597.8 450 67.3
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.0e-168 595.9 454 67.6
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 3.0e-168 595.9 448 66.5
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.1e-167 594.0 454 66.5
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 1.2e-166 590.5 444 68.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-166 590.5 444 68.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.2e-166 590.5 444 68.0
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.2e-166 590.5 450 67.1
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 2.1e-166 589.7 444 67.8
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.1e-166 589.7 444 67.8
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.0e-165 585.5 448 65.0
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 7.5e-164 581.3 449 66.6
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.9e-162 576.6 449 65.3
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 4.1e-162 575.5 441 66.7
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 1.6e-161 573.5 439 67.0
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 2.3e-160 569.7 448 65.8
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.3e-160 569.7 443 66.8
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 1.4e-157 560.5 450 62.7
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.5e-156 557.0 378 72.8
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.3e-155 553.9 461 63.8
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.1e-154 550.8 440 62.3
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.2e-153 547.4 449 63.9
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 2.1e-153 546.6 399 69.4
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.0e-152 544.3 449 63.0
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 3.6e-150 535.8 470 61.5
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 8.1e-150 534.6 464 61.0
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 1.3e-147 527.3 449 61.2
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.8e-147 525.8 358 75.1
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 1.1e-146 524.2 445 62.2
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 1.9e-143 513.5 358 72.1
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 5.4e-138 495.4 444 57.2
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 2.0e-132 476.9 440 57.0
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 7.9e-129 464.9 354 68.9
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 5.1e-128 462.2 367 64.6
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 1.5e-127 460.7 454 55.1
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 2.8e-126 456.4 618 43.9
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 1.2e-124 451.1 308 75.0
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.0e-120 438.0 448 49.3
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 1.1e-119 434.5 326 66.9
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 2.8e-118 429.9 449 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 6.2e-118 428.7 439 49.4
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.0e-115 421.4 453 49.0
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.5e-91 339.0 204 80.4
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 4.4e-87 326.2 286 60.1
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.4e-85 321.2 326 49.7
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 1.3e-83 314.7 448 40.0
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.9e-74 284.3 227 63.0
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.3e-67 261.5 208 62.0
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 7.3e-50 202.6 156 62.8
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 9.5e-42 175.6 405 32.6
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 7.5e-39 166.0 201 50.2
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 9.5e-34 149.1 102 72.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 6.8e-32 142.9 112 61.6
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-22 110.9 91 60.4
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 2.3e-19 101.3 106 43.4
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.8e-16 91.7 75 61.3
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 6.9e-16 89.7 92 43.5
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.9e-10 71.6 126 35.7
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 4.8e-09 67.0 63 47.6
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.2e-09 66.6 52 61.5
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 6.2e-09 66.6 68 51.5
Haze_21185 Corylus avellana HOM05D000405 ORTHO05D000712 9.0e-08 62.8 28 96.4
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 2.2e-06 58.2 33 78.8
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 3.8e-06 57.4 33 81.8


User provided reference genes

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