Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 0.0e+00 1250.3 661 100.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 0.0e+00 1179.1 654 95.6
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.1e-260 903.3 655 75.0
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 8.8e-258 893.6 654 74.3
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 3.8e-192 675.6 656 57.8
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 7.9e-190 667.9 664 59.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 4.8e-187 658.7 657 56.8
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 3.1e-186 656.0 661 57.5
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.8e-181 640.2 654 56.6
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.3e-179 634.0 654 57.6
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.3e-179 634.0 660 56.2
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.0e-177 626.7 659 55.7
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 7.7e-177 624.8 654 56.7
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.2e-175 619.4 659 55.5
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.5e-175 618.6 659 55.5
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 9.4e-175 617.8 658 54.9
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.4e-173 614.0 655 55.1
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.1e-172 610.9 659 54.8
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.8e-171 605.5 656 52.9
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 3.4e-169 599.4 656 53.8
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.7e-168 597.0 654 54.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 2.2e-168 596.7 664 52.9
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.0e-165 587.8 668 52.8
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.4e-162 576.6 658 50.8
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 4.1e-162 575.9 656 50.5
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.3e-162 575.5 651 52.4
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 5.3e-162 575.5 656 50.5
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.5e-161 572.8 664 51.1
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 8.5e-160 568.2 658 51.2
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 4.0e-157 559.3 631 50.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 5.2e-157 558.9 664 49.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 6.7e-157 558.5 618 52.8
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.4e-154 550.8 627 51.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.8e-154 550.4 656 48.3
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 2.4e-154 550.1 649 50.5
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.6e-153 547.4 648 49.8
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 3.5e-153 546.2 657 49.8
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 3.5e-153 546.2 665 50.4
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 8.0e-150 535.0 641 48.5
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.2e-149 532.3 658 48.8
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.5e-148 530.8 549 57.9
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 5.7e-148 528.9 658 47.7
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 1.8e-146 523.9 667 52.0
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 1.6e-145 520.8 659 48.3
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.6e-145 520.8 658 48.3
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 2.8e-139 500.0 613 48.5
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 6.6e-136 488.8 695 45.0
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 3.2e-130 469.9 679 44.2
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 4.6e-129 466.1 654 47.1
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.9e-123 446.8 662 44.0
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.9e-122 444.1 646 43.5
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 8.6e-120 435.3 649 43.1
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.4e-114 417.2 700 41.4
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.4e-114 417.2 700 41.4
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.1e-114 415.6 649 42.5
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.2e-113 414.8 655 42.6
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.3e-112 410.6 667 41.5
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 2.3e-112 410.6 646 41.2
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.9e-111 407.5 664 41.0
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.1e-109 401.7 689 39.6
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 8.9e-109 398.7 655 39.5
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.6e-108 397.1 645 40.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.6e-105 387.9 595 44.2
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.1e-105 387.5 616 41.7
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 2.1e-102 377.5 638 40.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.3e-99 368.2 651 38.6
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 5.4e-98 362.8 666 37.2
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.6e-97 361.3 655 39.2
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.0e-96 358.6 741 37.1
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 5.8e-92 342.8 611 40.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 2.7e-89 334.0 594 38.0
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 3.0e-88 330.5 512 42.0
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.1e-88 329.7 642 40.0
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.1e-85 322.0 654 37.6
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.9e-71 274.6 596 37.1
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 2.5e-71 274.2 210 70.5
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 4.2e-66 256.9 686 33.1
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.0e-64 252.3 240 58.3
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 5.1e-64 250.0 377 43.5
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 6.5e-59 233.0 328 47.9
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.0e-55 221.5 285 49.1
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 5.5e-50 203.4 443 37.5
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.8e-48 198.4 157 66.2
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 2.0e-47 194.9 151 66.9
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.3e-46 192.2 465 34.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.2e-44 185.7 211 50.7
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.0e-43 182.6 174 56.3
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.7e-41 173.7 202 51.0
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 6.1e-41 173.3 144 63.9
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 5.2e-32 143.7 170 47.6
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.7e-28 131.3 156 48.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 4.7e-25 120.6 351 31.9
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 6.3e-22 110.2 163 41.7
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 4.5e-20 104.0 92 58.7
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 3.4e-15 87.8 111 45.9
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 5.6e-10 70.5 155 34.8
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.7e-06 58.9 153 29.4


User provided reference genes

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