Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 6.3e-232 807.0 383 100.0
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 6.8e-186 654.1 383 84.3
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.5e-169 599.7 383 77.3
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.4e-167 592.4 384 76.0
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 5.4e-167 591.3 382 74.9
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 9.3e-167 590.5 380 75.3
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 4.6e-166 588.2 387 75.7
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.3e-165 586.6 387 74.4
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.3e-165 586.6 390 74.9
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 3.0e-165 585.5 383 74.4
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 4.3e-164 581.6 387 74.2
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.1e-163 579.3 386 74.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.1e-163 579.3 388 74.2
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 2.8e-163 578.9 387 74.4
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.8e-163 578.9 387 74.4
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.6e-163 578.6 387 74.4
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.1e-162 577.0 388 74.0
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-162 577.0 387 74.4
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.1e-162 577.0 383 73.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.4e-162 576.6 385 73.5
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.3e-162 574.7 378 73.5
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.9e-162 574.3 390 73.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.5e-161 573.2 383 73.6
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.0e-161 572.8 374 73.3
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.4e-161 572.0 387 73.9
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 3.4e-161 572.0 390 72.8
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.5e-161 571.6 381 73.8
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.8e-161 571.2 383 72.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.8e-161 571.2 376 74.5
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 9.9e-161 570.5 383 72.3
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 9.9e-161 570.5 382 73.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.3e-160 570.1 381 72.2
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.7e-160 569.7 374 75.1
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.2e-160 569.3 383 71.8
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.9e-160 568.9 380 74.2
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.9e-160 568.2 387 72.1
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.9e-160 568.2 387 73.4
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 6.4e-160 567.8 382 73.6
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.4e-160 567.8 377 74.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.9e-159 566.2 371 73.3
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.9e-159 566.2 381 73.0
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.4e-159 565.8 381 73.8
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.4e-159 565.8 383 71.3
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.4e-159 565.8 379 70.7
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 9.3e-159 563.9 373 73.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 9.3e-159 563.9 387 72.6
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.2e-158 563.5 384 71.6
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.2e-158 563.5 390 71.5
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.6e-158 563.1 375 72.5
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.6e-158 563.1 387 72.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 2.1e-158 562.8 387 72.6
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 6.0e-158 561.2 383 70.8
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.3e-157 559.3 384 70.6
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.3e-157 559.3 384 70.6
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 3.9e-157 558.5 366 73.5
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 5.1e-157 558.1 383 72.1
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.1e-156 557.0 377 70.0
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.1e-156 557.0 377 72.1
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.1e-156 557.0 375 72.0
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.5e-156 556.6 368 73.4
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.5e-156 556.6 385 71.2
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.5e-156 556.6 384 70.6
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 1.9e-156 556.2 386 71.0
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 1.9e-156 556.2 380 72.4
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.9e-156 556.2 380 70.3
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 2.5e-156 555.8 379 71.0
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 4.3e-156 555.1 382 70.9
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 5.6e-156 554.7 376 72.6
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 5.6e-156 554.7 378 71.4
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 5.6e-156 554.7 381 71.4
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.3e-155 553.5 382 70.9
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.3e-155 553.5 376 72.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.6e-155 553.1 381 71.7
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.1e-155 552.7 378 71.2
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 2.8e-155 552.4 378 70.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.4e-154 550.1 377 70.0
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.8e-154 549.7 379 71.0
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.4e-154 549.3 382 71.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.4e-154 549.3 377 71.4
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 2.4e-154 549.3 381 71.1
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 3.1e-154 548.9 362 74.9
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.1e-154 548.9 377 70.8
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.1e-154 548.9 377 70.8
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 6.9e-154 547.7 383 69.7
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 6.9e-154 547.7 381 69.6
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 1.2e-153 547.0 382 69.9
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 2.0e-153 546.2 372 71.8
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 2.6e-153 545.8 382 68.3
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 5.8e-153 544.7 387 69.5
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 7.6e-153 544.3 382 69.4
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 7.6e-153 544.3 382 69.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 3.2e-151 538.9 382 68.8
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 3.2e-151 538.9 382 68.8
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 2.1e-150 536.2 383 68.9
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 6.0e-150 534.6 373 68.9
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 3.0e-149 532.3 380 67.6
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 5.1e-149 531.6 385 69.1
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.9e-148 529.6 377 69.5
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 3.3e-148 528.9 378 69.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 3.3e-148 528.9 383 68.4
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 5.7e-148 528.1 383 67.4
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 2.0e-145 519.6 383 66.8
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 4.5e-145 518.5 389 67.1
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.3e-144 516.9 389 67.1
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 1.3e-139 500.4 263 88.2
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 4.8e-139 498.4 362 66.9
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.8e-139 498.4 370 65.1
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 4.8e-139 498.4 391 63.7
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.8e-138 496.5 337 71.2
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.4e-138 496.1 360 68.3
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.0e-137 493.0 279 83.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.8e-136 488.8 353 66.0
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.7e-134 482.6 366 63.9
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 1.4e-133 480.3 379 64.9
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 5.9e-129 464.9 375 59.7
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 3.3e-124 449.1 250 81.2
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.6e-121 440.3 368 57.3
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.6e-121 440.3 368 57.3
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 3.5e-121 439.1 370 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.5e-119 433.7 367 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.3e-112 410.6 370 53.2
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.8e-109 398.3 288 69.1
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.1e-98 362.5 372 50.3
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 2.5e-95 353.2 311 57.2
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.7e-88 330.5 273 60.1
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 6.4e-83 312.0 371 44.2
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 8.9e-77 291.6 410 39.0
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 7.1e-66 255.4 418 35.9
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.8e-57 225.3 123 80.5
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.3e-24 118.2 140 47.9
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.2e-22 110.9 147 45.6
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.3e-22 109.4 74 73.0
Haze_10799 Corylus avellana HOM05D000216 ORTHO05D000634 3.8e-19 100.1 55 80.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 5.5e-18 96.3 66 71.2
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 8.8e-16 89.0 47 83.0
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.1e-13 82.0 49 75.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.1e-13 82.0 41 85.4
Potri.003G047101 Populus trichocarpa HOM05D000003 ORTHO05D000007 2.7e-09 67.4 51 56.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.0e-08 65.5 46 65.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.4e-08 65.1 48 56.2
Oeu019215.1 Olea europaea HOM05D000003 ORTHO05D000007 3.9e-08 63.5 49 49.0
Oeu024314.1 Olea europaea HOM05D000003 ORTHO05D000007 8.8e-08 62.4 49 49.0
Oeu012753.1 Olea europaea HOM05D000003 ORTHO05D000007 1.5e-07 61.6 52 42.3
Oeu008054.1 Olea europaea HOM05D000003 ORTHO05D000007 5.7e-07 59.7 49 46.9
Oeu021298.1 Olea europaea HOM05D000003 ORTHO05D000007 9.7e-07 58.9 52 44.2
Atru.chr5.2025 Acer truncatum HOM05D000003 ORTHO05D000007 1.7e-06 58.2 55 49.1
Atru.chr3.2011 Acer truncatum HOM05D000003 ORTHO05D000007 2.2e-06 57.8 55 49.1
Atru.chr5.2029 Acer truncatum HOM05D000988 ORTHO05D000007 6.3e-06 56.2 55 47.3


User provided reference genes

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