Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.8e-81 306.2 202 100.0
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 8.7e-23 111.3 97 80.4
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.1e-22 110.9 97 81.4
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 1.9e-22 110.2 97 79.4
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 2.8e-21 106.3 97 79.4
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 4.0e-20 102.4 97 78.4
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 2.0e-19 100.1 97 79.4
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 4.5e-19 99.0 97 78.4
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 4.5e-19 99.0 97 78.4
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 5.8e-19 98.6 97 75.3
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.0e-18 97.8 97 77.3
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.3e-18 97.4 97 74.2
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.7e-18 97.1 97 76.3
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 2.2e-18 96.7 97 78.4
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 3.8e-18 95.9 97 74.2
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.8e-18 95.9 97 74.2
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.8e-18 95.9 97 74.2
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.5e-18 95.1 97 74.2
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 6.5e-18 95.1 97 75.3
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 8.4e-18 94.7 90 77.8
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.1e-17 94.4 93 77.4
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.4e-17 94.0 97 75.3
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.9e-17 93.6 97 76.3
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.9e-17 93.6 95 74.7
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 3.2e-17 92.8 97 73.2
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 4.2e-17 92.4 88 79.5
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 5.5e-17 92.0 91 72.5
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 5.5e-17 92.0 88 78.4
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 7.1e-17 91.7 97 75.3
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.2e-16 90.9 98 71.4
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 6.0e-16 88.6 92 72.8
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 6.0e-16 88.6 97 71.1
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 6.0e-16 88.6 90 77.8
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 1.3e-15 87.4 90 74.4
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 1.8e-15 87.0 97 70.1
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 3.0e-15 86.3 88 75.0
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 3.9e-15 85.9 98 67.3
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.1e-14 84.3 94 72.3
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.1e-14 84.3 93 71.0
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.9e-14 83.6 97 45.4
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.5e-14 83.2 97 70.1
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 3.3e-14 82.8 90 75.6
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 4.3e-14 82.4 86 75.6
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 5.7e-14 82.0 108 62.0
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 7.4e-14 81.6 95 69.5
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 9.6e-14 81.3 97 70.1
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.3e-13 80.9 97 68.0
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.6e-13 80.5 94 70.2
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 2.8e-13 79.7 86 74.4
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 2.8e-13 79.7 86 74.4
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 3.7e-13 79.3 86 74.4
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 6.2e-13 78.6 98 67.3
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 8.2e-13 78.2 108 61.1
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.1e-12 77.8 86 72.1
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.4e-12 77.4 86 73.3
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.4e-12 77.4 86 73.3
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 3.1e-12 76.3 108 61.1
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 4.1e-12 75.9 87 69.0
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 5.3e-12 75.5 93 67.7
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 6.9e-12 75.1 108 60.2
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 1.5e-11 73.9 86 72.1
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 1.5e-11 73.9 95 68.4
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-11 73.6 86 70.9
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 2.6e-11 73.2 86 70.9
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 5.8e-11 72.0 86 69.8
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 7.6e-11 71.6 84 70.2
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 7.6e-11 71.6 84 70.2
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.7e-10 70.5 88 68.2
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 2.9e-10 69.7 37 75.7
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 3.8e-10 69.3 108 57.4
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 3.8e-10 69.3 37 75.7
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 6.5e-10 68.6 82 73.2
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 3.2e-09 66.2 80 70.0
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 3.2e-09 66.2 34 79.4
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.2e-09 66.2 86 68.6
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 4.2e-09 65.9 36 75.0
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 4.2e-09 65.9 36 75.0
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 4.2e-09 65.9 85 69.4
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 5.5e-09 65.5 89 64.0
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 2.7e-08 63.2 47 55.3
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 3.5e-08 62.8 93 60.2
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 7.9e-08 61.6 91 62.6
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 7.9e-08 61.6 91 63.7
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.0e-07 61.2 37 62.2
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 2.3e-07 60.1 96 60.4
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 3.9e-07 59.3 35 68.6
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.9e-07 59.3 36 66.7
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 5.1e-07 58.9 83 38.6
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 6.7e-07 58.5 96 33.3
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 6.7e-07 58.5 34 64.7
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 6.7e-07 58.5 36 69.4
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 8.7e-07 58.2 36 63.9
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 8.7e-07 58.2 36 63.9
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 4.3e-06 55.8 34 61.8
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 5.7e-06 55.5 85 63.5
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 9.7e-06 54.7 31 67.7
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 9.7e-06 54.7 31 67.7
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 9.7e-06 54.7 32 65.6


User provided reference genes

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