Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 8.0e-174 613.6 299 100.0
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.5e-129 465.3 334 75.4
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.0e-51 205.7 136 78.7
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.3e-50 203.0 136 77.9
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-49 200.7 136 76.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 6.1e-49 198.7 136 76.5
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.2e-47 194.5 136 74.3
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.5e-47 194.1 136 73.5
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.0e-47 193.7 136 74.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.0e-47 193.7 136 74.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 3.4e-47 193.0 136 73.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 4.4e-47 192.6 136 72.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 5.7e-47 192.2 136 74.3
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.2e-46 190.3 136 72.1
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.8e-46 189.9 134 73.1
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.9e-46 189.1 136 72.8
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.3e-46 188.7 136 72.8
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 6.3e-46 188.7 135 71.9
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 6.3e-46 188.7 136 72.1
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 8.3e-46 188.3 136 72.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 8.3e-46 188.3 136 72.1
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.1e-45 188.0 131 74.0
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.4e-45 187.6 136 72.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.4e-45 187.6 136 72.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.8e-45 187.2 136 72.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.8e-45 187.2 136 72.8
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.8e-45 187.2 136 71.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.4e-45 186.8 136 70.6
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.4e-45 186.8 136 72.1
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.4e-45 186.8 136 72.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 3.1e-45 186.4 136 71.3
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.1e-45 186.4 136 72.1
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.1e-45 186.4 136 72.1
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 3.1e-45 186.4 136 72.1
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.1e-45 186.4 136 71.3
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.1e-45 186.0 136 71.3
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.1e-45 186.0 136 70.6
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.1e-45 186.0 136 71.3
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 4.1e-45 186.0 136 71.3
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.4e-45 185.7 136 70.6
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 5.4e-45 185.7 135 71.1
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.4e-45 185.7 136 71.3
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-45 185.3 136 71.3
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-45 185.3 136 71.3
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 71.3
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 71.3
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 69.9
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 71.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 71.3
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 9.2e-45 184.9 136 72.1
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.2e-44 184.5 136 70.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.6e-44 184.1 136 70.6
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.6e-44 184.1 136 72.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.6e-44 184.1 136 72.1
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.6e-44 184.1 136 70.6
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.6e-44 184.1 136 70.6
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.6e-44 184.1 135 70.4
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.0e-44 183.7 136 71.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.0e-44 183.7 136 71.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.0e-44 183.7 136 70.6
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.7e-44 183.3 134 70.9
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-44 183.0 135 70.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 3.5e-44 183.0 135 70.4
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.5e-44 183.0 135 70.4
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.5e-44 183.0 135 70.4
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.5e-44 183.0 135 70.4
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.5e-44 183.0 136 69.1
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.5e-44 183.0 136 71.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 3.5e-44 183.0 136 69.9
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.5e-44 183.0 153 66.0
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 4.5e-44 182.6 136 69.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 4.5e-44 182.6 136 71.3
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 4.5e-44 182.6 233 48.9
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 4.5e-44 182.6 136 69.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.5e-44 182.6 136 69.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 4.5e-44 182.6 136 69.9
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 5.9e-44 182.2 136 69.9
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 5.9e-44 182.2 136 69.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.8e-44 181.8 136 69.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 7.8e-44 181.8 136 69.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.1
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.0e-43 181.4 135 71.1
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.1
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.9
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.0e-43 181.4 136 69.9
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.3e-43 181.0 135 68.1
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-43 181.0 135 69.6
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-43 181.0 136 69.1
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.3e-43 181.0 136 69.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-43 181.0 136 68.4
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.3e-43 181.0 136 69.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.7e-43 180.6 136 69.9
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.3e-43 180.3 136 69.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.3e-43 180.3 136 70.6
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 2.3e-43 180.3 136 69.9
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.3e-43 180.3 135 68.9
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.9e-43 179.9 136 69.1
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.9e-43 179.9 135 70.4
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 2.9e-43 179.9 136 70.6
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.9e-43 179.9 136 70.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.9e-43 179.5 136 69.1
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.9e-43 179.5 136 69.1
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 8.6e-43 178.3 136 68.4
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.1e-42 177.9 136 68.4
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.1e-42 177.9 135 68.1
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.5e-42 177.6 149 63.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.5e-42 177.6 136 69.1
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.5e-42 176.8 136 67.6
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.5e-42 176.8 136 69.1
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.5e-42 176.8 136 68.4
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.5e-42 176.8 136 68.4
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.3e-42 176.4 136 68.4
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.3e-42 176.4 136 68.4
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.3e-42 176.0 136 68.4
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.3e-42 176.0 136 66.9
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 7.3e-42 175.3 135 68.1
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 7.3e-42 175.3 135 67.4
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 7.3e-42 175.3 135 67.4
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 9.5e-42 174.9 130 70.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 9.5e-42 174.9 135 68.1
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 6.1e-41 172.2 131 69.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.0e-41 171.8 136 66.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.0e-40 171.4 131 67.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.4e-40 171.0 133 66.9
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.8e-40 170.6 136 67.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 3.1e-40 169.9 133 65.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 5.2e-40 169.1 135 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.9e-38 162.5 136 60.3
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.1e-37 161.4 136 58.8
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-36 157.5 132 65.2
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.6e-36 157.5 136 60.3
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 6.0e-36 155.6 115 73.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.0e-36 155.6 130 64.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.3e-35 153.7 135 56.3
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.0e-35 153.3 136 61.8
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.6e-35 152.1 94 80.9
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-34 151.0 94 80.9
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.2e-32 142.5 96 75.0
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.2e-32 142.5 101 72.3
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.9e-30 136.7 136 52.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.6e-28 131.0 86 76.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-27 127.9 106 64.2
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-26 124.4 103 64.1
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.1e-21 108.2 133 53.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.7e-19 100.9 58 79.3
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 5.1e-19 99.4 107 56.1
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 7.3e-18 95.5 142 40.8
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-13 81.3 48 75.0
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-13 81.3 48 75.0
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-13 80.9 48 72.9
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.5e-12 76.6 40 85.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 8.7e-11 72.0 88 45.5
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 9.6e-10 68.6 98 39.8
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.6e-09 66.6 104 37.5
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.2e-09 65.9 72 48.6


User provided reference genes

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