Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06373 Corylus avellana HOM05D004313 ORTHO05D005036 1.7e-134 482.6 243 100.0
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 5.5e-64 248.4 162 83.3
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.6e-63 246.9 162 82.7
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 2.0e-58 229.9 162 77.8
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 1.4e-56 223.8 160 75.0
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 1.9e-56 223.4 167 76.0
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 4.2e-56 222.2 162 72.8
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 4.2e-56 222.2 162 72.8
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 5.5e-56 221.9 162 74.1
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.5e-56 221.9 162 73.5
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.5e-56 221.9 162 73.5
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.5e-56 221.9 162 73.5
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 7.2e-56 221.5 162 73.5
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 9.4e-56 221.1 162 72.2
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 1.6e-55 220.3 162 72.8
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 6.1e-55 218.4 134 84.3
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 6.1e-55 218.4 162 72.8
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 6.1e-55 218.4 162 71.0
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 7.9e-55 218.0 160 75.0
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.8e-54 216.9 134 84.3
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.3e-54 216.5 162 71.6
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 2.3e-54 216.5 162 71.0
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 3.9e-54 215.7 134 83.6
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 3.9e-54 215.7 162 70.4
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 6.7e-54 214.9 160 73.1
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 6.7e-54 214.9 162 70.4
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 1.5e-53 213.8 162 71.6
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.5e-53 213.8 162 71.0
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 2.6e-53 213.0 162 71.6
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 4.4e-53 212.2 162 69.8
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 4.4e-53 212.2 162 71.0
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 7.4e-53 211.5 134 80.6
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-52 210.7 162 68.5
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-52 210.7 162 68.5
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 1.3e-52 210.7 162 68.5
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.3e-52 210.7 162 69.1
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 1.7e-52 210.3 162 68.5
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 1.7e-52 210.3 162 68.5
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 2.2e-52 209.9 162 69.8
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 2.2e-52 209.9 162 69.8
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 2.8e-52 209.5 162 70.4
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 3.7e-52 209.1 162 69.1
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 3.7e-52 209.1 162 67.3
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 4.8e-52 208.8 162 67.9
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 8.2e-52 208.0 162 70.4
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 1.4e-51 207.2 162 69.8
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 4.1e-51 205.7 162 66.7
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 4.1e-51 205.7 162 67.3
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 4.1e-51 205.7 162 67.3
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 5.3e-51 205.3 162 67.3
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 5.3e-51 205.3 162 67.9
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 5.3e-51 205.3 162 69.1
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 5.3e-51 205.3 160 69.4
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 7.0e-51 204.9 162 68.5
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 7.0e-51 204.9 160 67.5
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 7.0e-51 204.9 162 69.1
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 7.0e-51 204.9 134 79.9
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 9.1e-51 204.5 162 67.3
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 1.5e-50 203.8 162 66.7
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 1.5e-50 203.8 162 66.7
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 2.0e-50 203.4 162 67.9
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 3.5e-50 202.6 131 80.9
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 3.5e-50 202.6 162 66.0
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 5.9e-50 201.8 162 69.8
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.3e-49 200.7 162 67.3
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 1.3e-49 200.7 137 75.9
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.3e-49 200.7 134 76.9
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 1.7e-49 200.3 167 65.9
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.2e-49 199.9 162 66.0
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.1e-48 197.6 162 64.8
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.1e-48 197.6 162 66.7
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 1.5e-48 197.2 172 65.7
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.5e-48 196.4 162 64.8
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 2.5e-48 196.4 162 65.4
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 3.2e-48 196.1 162 64.2
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 5.5e-48 195.3 160 65.6
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 7.2e-48 194.9 162 66.0
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 2.1e-47 193.4 164 64.0
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.6e-47 192.6 162 63.6
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 3.6e-47 192.6 162 62.3
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 3.6e-47 192.6 162 62.3
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 4.7e-47 192.2 134 74.6
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 8.0e-47 191.4 162 63.6
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.8e-46 190.3 162 63.6
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 3.0e-46 189.5 162 63.6
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 3.0e-46 189.5 162 63.0
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 2.0e-45 186.8 162 63.6
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 2.0e-45 186.8 139 69.8
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 3.3e-45 186.0 134 73.1
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 5.7e-45 185.3 162 62.3
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 7.4e-45 184.9 162 62.3
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.3e-44 184.1 134 69.4
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 1.3e-44 184.1 162 63.6
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 1.7e-44 183.7 162 60.5
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 4.8e-44 182.2 162 61.1
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.1e-43 181.0 134 71.6
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 2.4e-43 179.9 162 59.3
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 2.4e-43 179.9 162 60.5
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.1e-43 179.1 262 45.4
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 1.2e-42 177.6 131 71.0
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.3e-41 174.1 131 72.5
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.2e-41 173.3 134 67.9
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 3.2e-40 169.5 134 65.7
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 1.6e-39 167.2 134 64.9
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 3.6e-39 166.0 131 63.4
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 3.6e-39 166.0 134 61.9
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 4.7e-39 165.6 154 59.1
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 8.0e-39 164.9 162 56.8
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 4.0e-38 162.5 134 64.2
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 6.8e-38 161.8 137 62.8
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 1.3e-36 157.5 162 53.1
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 2.8e-36 156.4 160 53.1
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 1.8e-35 153.7 160 53.1
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 5.0e-33 145.6 135 59.3
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 3.6e-31 139.4 111 66.7
Cfa011027 Carpinus fangiana HOM05D005587 ORTHO05D007287 1.4e-30 137.5 66 93.9
Haze_27597 Corylus avellana HOM05D005587 ORTHO05D007287 2.3e-30 136.7 66 93.9
Haze_06348 Corylus avellana HOM05D005587 ORTHO05D007287 5.2e-30 135.6 66 93.9
CSS0038251 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 7.5e-29 131.7 97 73.2
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 4.1e-27 125.9 143 50.3
MBI18_g11289_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 1.2e-26 124.4 91 72.5
arahy.Tifrunner.gnm1.ann1.225J64 Arachis hypogaea HOM05D004313 ORTHO05D005036 3.8e-25 119.4 119 61.3
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 6.6e-25 118.6 165 37.6
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 1.9e-24 117.1 137 43.8
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 1.4e-22 110.9 73 80.8
Cpa.g.sc2206.1 Carica papaya HOM05D004313 ORTHO05D005036 2.4e-19 100.1 57 86.0
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 2.0e-18 97.1 142 40.1
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 9.8e-13 78.2 70 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3833 Anthoceros agrestis HOM05D004313 ORTHO05D005036 2.4e-11 73.6 86 45.3
Cre02.g097250 Chlamydomonas reinhardtii HOM05D004313 ORTHO05D005036 4.1e-11 72.8 179 32.4
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.3e-09 67.8 44 75.0
arahy.Tifrunner.gnm1.ann1.S2RLRJ Arachis hypogaea HOM05D004313 ORTHO05D005036 3.9e-09 66.2 46 76.1


User provided reference genes

Program Settings